Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0130
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   29   4.5  

>SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 611 IXGGVCCG*RRTLANDCVPEVSARKCTYVI*FYVCF*LRLERRRY 477
           + GG C     +   DC+   +   C Y + F+V   LRLE + +
Sbjct: 193 LNGGTCVDLVASYRCDCIKGFNGTNCQYKLGFFVAIWLRLESKTF 237


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 2   IRHEVLCNIVLNKFCVSPSLYILLCCR--QCQWDGQ 103
           + ++ L N+V N  C+  S Y LLCC+  +C+ D Q
Sbjct: 632 LANKELHNLVSNSQCLLKSAYGLLCCKRNKCELDVQ 667


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,803,521
Number of Sequences: 59808
Number of extensions: 380867
Number of successful extensions: 850
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)