Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0130
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    28   7.0  

>Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical
           protein F55A11.1 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +1

Query: 535 HFRAETSG---TQSLANVRRQPQQTPPXIYQETIKDS 636
           HF AE  G   TQ+ AN   QP   P  +  ET+ DS
Sbjct: 107 HFHAENPGPQHTQNNANANHQPPPLPSEVELETMIDS 143


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +1

Query: 580 RRQPQQTPPXIYQET--IKDSPPSSP 651
           ++QPQ  PP IY +T  I  +PP  P
Sbjct: 111 QQQPQPAPPPIYSQTVVIPQAPPPPP 136


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 61  LYFIMLPTVSVGWPVLAKTIWARF 132
           L+F+ L    VG+ V+A T+W RF
Sbjct: 12  LFFLNLAQTLVGFTVIALTLWIRF 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,502,496
Number of Sequences: 27780
Number of extensions: 282206
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)