Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0129
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 179 4e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 2e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 99 7e-22
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 8e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 1e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 38 0.002
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 33 0.028
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 33 0.049
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 31 0.20
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.0
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 1.8
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.2
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 7.4
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 25 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 179 bits (435), Expect = 4e-46
Identities = 80/90 (88%), Positives = 83/90 (92%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVAIQ 510
APLNPK+NREKMTQI+FETFN PA YVAIQ
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Score = 106 bits (255), Expect = 2e-24
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +3
Query: 510 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 662
AVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDY
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDY 188
Score = 104 bits (250), Expect = 1e-23
Identities = 45/50 (90%), Positives = 49/50 (98%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKD 51
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (239), Expect = 2e-22
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = +1
Query: 226 RDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 405
+ G + + VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 406 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 510
+LLTE P+NP ANREKM + MFE + +YVAIQ
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQ 137
Score = 72.5 bits (170), Expect = 5e-14
Identities = 32/51 (62%), Positives = 40/51 (78%)
Frame = +3
Query: 510 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 662
AVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T Y
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRY 188
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 110 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 214
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 98.7 bits (235), Expect = 7e-22
Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +1
Query: 253 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 429
++VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 430 NPKANREKMTQIMFETFNTPAMYVAIQP 513
N+EK+ + +ET N PA+ ++QP
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 75.4 bits (177), Expect = 7e-15
Identities = 31/50 (62%), Positives = 44/50 (88%)
Frame = +3
Query: 513 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 662
VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDY
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDY 193
Score = 58.8 bits (136), Expect = 6e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 8e-21
Identities = 40/86 (46%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 432
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 433 PKANREKMTQIMFETFNTPAMYVAIQ 510
P NRE +IMFE+FN +Y+A+Q
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/38 (55%), Positives = 29/38 (76%)
Frame = +3
Query: 543 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 656
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVT 217
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 205
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 2e-11
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 DGR--YGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 402
DGR +G E +Y +S G + +K I +G V NWD +W + +L+ P EH
Sbjct: 46 DGRRLFGEEYIY-----KSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEH 99
Query: 403 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 510
P+L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 100 PILITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 525 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 659
+ASG+ T ++D G S IY+G+ L +G + D
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAIND 185
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +1
Query: 226 RDGRYGTEGLYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 402
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 403 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 507
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 217
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 29.5 bits (63), Expect = 0.45
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 540 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 662
++GIVL+ G+ SH +P+ G + R+ G + Y
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSY 205
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 256 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 429
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 430 NPKANREKMTQIMFETFNTPAMYVAIQ 510
NP++ R+++ + FE + PA Y+ Q
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 208
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 307 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 474
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 475 TFNTPAMYVAIQP 513
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
Score = 32.3 bits (70), Expect = 0.064
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 513 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 662
++ LYA G G+V+D G + PI +G + A +L L GR +T +
Sbjct: 185 LMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQH 234
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 33.5 bits (73), Expect = 0.028
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 549 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 662
+V+DSG +H +P+ + A+ R+D+ G+ LT+Y
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNY 196
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.7 bits (71), Expect = 0.049
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Frame = +1
Query: 253 LYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWH-HTFYNELRVAPEEHPVLLTE--A 423
LYV D++ + ++ P + D + + + +Y L E+HP+LLT+ A
Sbjct: 1360 LYVHDQSYDNAAAVMMEQPEAFDHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLA 1419
Query: 424 PLNPKANREKMTQIMFETFNTPAM---YVAIQ 510
L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1420 ALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 30.7 bits (66), Expect = 0.20
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 339 IPVSDDSVFDGVFEGQDTSFALCLVSYVQSFCPIPTITP*WRGLPTIEGNTARGASSPAK 160
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 159 PALHIP 142
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 511 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 615
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 499 VAIQPCSRCTRPVVPPVSCWTPATVSPTPCPST 597
V P SR T+P+ S +P VSP PST
Sbjct: 258 VFYNPVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.1 bits (57), Expect = 2.4
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Frame = +1
Query: 367 FYNE--LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQPCSRCTRPVV 540
FY+E L++ E + ANR K TP+ R P
Sbjct: 453 FYDEPLLKICQEATQPKSLYRSASAAANRPKTATTTDSVNRTPSQR------GRVAVPST 506
Query: 541 PPVSCWTPATVSP-TPCPSTRDTHSPTPSCVWT*PVATS 654
P V + A SP TP P ++T +P+ S P ATS
Sbjct: 507 PSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS 545
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 237 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 103
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 532 PVVPPVS-CWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTT 663
P VPP S T + PT ST SP P+ + +TS T
Sbjct: 193 PTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPT 237
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 532 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 624
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 409 LLTEAPLNPKANREKMTQIMFETFN 483
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 243 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 151
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 523 CTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT*PVATSQTT 663
C + PV + T S TP P+T + +PTP+ T T+Q+T
Sbjct: 833 CDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST--TTTAQST 876
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 462 DH-VRNIQHARHVRRHPAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 614
DH V+N A ++R++ + S +A G+ +G G+ H + + +GYA+P
Sbjct: 126 DHDVQNKSEA-NLRKYKNIES-FAKGQGIDFY-PAGRGIGHQIMVEQGYAMP 174
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 581 VGDTVAGVQHDTGGTTGRVQREHGWM 504
+GD + V + G TTGR +R GW+
Sbjct: 295 IGDHLQSVGREVGVTTGR-KRRCGWL 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,065
Number of Sequences: 5004
Number of extensions: 60307
Number of successful extensions: 227
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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