Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0128
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 73 3e-14
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 63 4e-11
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 31 0.20
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 28 1.1
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 28 1.4
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe... 27 2.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 2.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 7.7
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.7
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +1
Query: 40 LFFGCRYKEKDYHCREELEGMVGDGNLSLYCAFSRDQEDKIYVQHKIFENRETIWRLLN- 216
LFFGCR K D+ ++ E +G L L+CAFSRDQE K YVQH I EN E ++ LLN
Sbjct: 444 LFFGCRNKSMDFLFEKDWEKYTEEGTLKLFCAFSRDQEKKKYVQHSIQENGELVYNLLNE 503
Query: 217 NNAHVFISGNA 249
+ F+SG++
Sbjct: 504 KDGMFFVSGSS 514
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 62.9 bits (146), Expect = 4e-11
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Frame = +1
Query: 40 LFFGCRYKEKDYHCREELEGM--VGDGNLSLYCAFSRDQEDKIYVQHKIFENRETIWRLL 213
LF+GC+Y +KD+ +EE + V + L AFSR+Q+ KIYVQH++ E+ +TI +L+
Sbjct: 567 LFYGCQYSDKDFLYKEEWQQYKDVLKDSFELITAFSREQDHKIYVQHRLLEHSDTIAKLV 626
Query: 214 NNNAHVFISGNA 249
A +I G+A
Sbjct: 627 EEGAAFYICGDA 638
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 30.7 bits (66), Expect = 0.20
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 10 RGTASKDXMHLFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFE 186
+G S D + L+ G R + ++Y E+ E L+ + AFSRDQ KIY+Q +
Sbjct: 884 QGIESGDIL-LYLGSRTQREEYLYGEDWEAYHSANLLTHIGQAFSRDQPYKIYIQDVMRS 942
Query: 187 NRETIWRLLNNNAHVF 234
++ + + L + F
Sbjct: 943 TKDMLKKALMDEGGSF 958
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 582 VVYGFTLRSRQMKMFTIEFFYNAICARYADHGLPLPXHIESSELFSFDP 436
V+YGF+L R M F FFY + D+ + +E S +DP
Sbjct: 156 VIYGFSLSYRIMCRFNSGFFYRNKALSHYDYYWRVEPGVEYSCDIPYDP 204
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 613 STASLXVNDRRGLWIHTAFSTN 548
ST +L ND R LW+H TN
Sbjct: 254 STINLIKNDERSLWVHFKAGTN 275
>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 27.1 bits (57), Expect = 2.5
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 58 YKEKDYHCREELEGMVGDGNLSLYCAFSRDQEDKIYVQHKIFENRETIWRLLNNNAHVFI 237
Y E Y + L +V G+ L C F+ ED ++F+N +++W L+ N +
Sbjct: 151 YFEHQYDLMQRLHPLV-IGHFDLICLFA--PEDA----KEVFKNSKSVWELIQRNIKYAV 203
Query: 238 S 240
S
Sbjct: 204 S 204
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 269 HVVRHLLALPDMNTWALLFSSRQIVSRFSNILCWT*ILSSWSLEK 135
+++ L+A+ D W + + IVS F N L W +LS + K
Sbjct: 279 YLINSLVAIHDYGAWDTVLMGKAIVSSFEN-LNWEAMLSMFDNPK 322
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 463 FYVXR*REPVVRISSADGVIKKFD 534
FY+ R+ V R+S D ++KK D
Sbjct: 210 FYLKPTRQTVYRLSEVDNLVKKLD 233
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 195 DDLAT-AEQQRPRVHIRQRQEMPDNVREALADVIR 296
D +AT A++ RP + I+ E P N ++A + +R
Sbjct: 15 DAIATFADESRPPIVIKLLSEDPSNYKDASIEAVR 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,630
Number of Sequences: 5004
Number of extensions: 50587
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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