Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0128
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644... 66 2e-11
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 64 7e-11
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 58 9e-09
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 50 2e-06
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251... 34 0.12
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546... 34 0.12
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 33 0.21
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 32 0.48
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18... 32 0.48
01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796 32 0.48
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 29 3.4
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 29 4.5
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687... 29 4.5
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 29 4.5
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 28 7.9
>04_04_1410 +
33363784-33364086,33364221-33364280,33364388-33364464,
33365032-33365089,33365179-33365262,33365358-33365394,
33365855-33365924,33366655-33366849,33366947-33367039,
33367187-33367418,33367515-33367598,33368205-33368301,
33368510-33368577,33368662-33368739,33368823-33368945,
33369059-33369172,33369288-33369368
Length = 617
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +1
Query: 40 LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 216
LFFGCR + DY +EL+ + +G LS L AFSR+ K YVQHK+ E IW +++
Sbjct: 503 LFFGCRNRNMDYIYEDELQNFIQEGALSELIVAFSREGPAKEYVQHKMTEKATEIWNIVS 562
Query: 217 NNAHVFISGNAK 252
++++ G+AK
Sbjct: 563 QGGYIYVCGDAK 574
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 64.5 bits (150), Expect = 7e-11
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +1
Query: 40 LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 216
LFFGCR ++ D+ +EL V G LS L AFSR+ K YVQHK+ E IW +++
Sbjct: 554 LFFGCRNRKMDFIYEDELNNFVETGALSELIVAFSREGPSKEYVQHKMAEKAPEIWSIIS 613
Query: 217 NNAHVFISGNAK 252
++++ G+AK
Sbjct: 614 QGGYIYVCGDAK 625
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 57.6 bits (133), Expect = 9e-09
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Frame = +1
Query: 43 FFGCRYKEKDY------HCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETI 201
FFGCR +E D+ + +G++ N + AFSRDQ K+YVQH+I E +
Sbjct: 437 FFGCRNQENDFLYKDFWYAHAHDQGVLSSKNGGGFFVAFSRDQPQKVYVQHRIREQSARV 496
Query: 202 WRLLNNNAHVFISGNAKR 255
W LL + A ++I+G++ +
Sbjct: 497 WNLLKSGAAIYIAGSSTK 514
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Frame = +1
Query: 43 FFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENR--------- 192
FFGCR + D+ +EL + +G LS L AFSR+ K YVQHK+ + R
Sbjct: 599 FFGCRNSKMDFIYEDELNTFLEEGALSELVLAFSREGPTKEYVQHKMSQKRCSYFLPLSV 658
Query: 193 --ETIWRLLNNNAHVFISGNAK 252
IW +++ ++++ G+AK
Sbjct: 659 QASEIWDMISQGGYIYVCGDAK 680
>07_01_0347 -
2509229-2509487,2509682-2509922,2510292-2510511,
2510943-2511278,2512047-2512103,2512187-2512210
Length = 378
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = +1
Query: 133 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISG 243
A SR+Q++K +YVQ KI E + I++LL+ AH++ G
Sbjct: 297 ALSREQKNKNGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCG 337
>03_06_0206 -
32353308-32353566,32353784-32354024,32354408-32354627,
32354981-32355316,32355632-32355688,32355787-32355810
Length = 378
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = +1
Query: 133 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISG 243
A SR+Q++K +YVQ KI E + I++LL+ AH++ G
Sbjct: 297 ALSREQKNKNAGKMYVQDKIEEYSDEIFKLLDGGAHIYFCG 337
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = -1
Query: 225 GVVVQQSPDRLAVLEYLVLDVDLIFLVSRKSAVQTQVPISHH 100
G V+ + PDRL+ + V DVDL S+ AV+T++PIS H
Sbjct: 312 GTVIARLPDRLST-GFAVADVDL----SKVEAVRTKMPISEH 348
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 31.9 bits (69), Expect = 0.48
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 459 WILCXEVEGARGPHIERRW 515
W +C EG+RGPH+ RW
Sbjct: 12 WRVCLSREGSRGPHLSMRW 30
>02_01_0030 -
183836-183903,183986-184453,184526-184604,184698-185183
Length = 366
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +1
Query: 82 REELEGM--VGDGNLSLYCAFSRDQE----DKIYVQHKIFENRETIWRLL-NNNAHVFIS 240
REE E M + L A SR+Q +K+Y+Q ++ E ++ +W LL +N +V++
Sbjct: 265 REEFERMKEIAPERFRLDFAVSREQTNAAGEKMYIQTRMAEYKDELWELLKKDNTYVYMC 324
Query: 241 G 243
G
Sbjct: 325 G 325
>01_03_0035 + 11838431-11838511,11838627-11839054,11839741-11841796
Length = 854
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 258 PDNVREALADVIRVCSGTSAAASSDAVRSLQEQGRLQVETW 380
PD++R+ +++R+C G A +S A L QG + +E W
Sbjct: 248 PDHLRKVSEEILRMCGGVPLAITSVA-SILAGQGDMMIEKW 287
>01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 15 HSVQGLXASFLRVSVQREGLPLQGRVGGDGGRWELEFVLR 134
H + AS V++Q L+ R GGDGG EL F+ R
Sbjct: 1108 HPLTKEFASHPHVTLQHMACMLKPRNGGDGGEKELTFLYR 1147
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 218 LFSSRQIVSRFSNILCWT*ILSSWSLEKAQYKL--KFPSPTIPSNSSLQ 78
L S + S + ILC + W++++ ++ K SP +PSNSS Q
Sbjct: 537 LNGSEEEKSAAAKILCGASFVCGWNIQEYVVRMVVKLLSPPLPSNSSTQ 585
>06_01_0895 +
6877386-6878475,6878577-6878838,6878932-6879017,
6879117-6879274,6879554-6879630,6879719-6879785
Length = 579
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = -1
Query: 222 VVVQQSPDRLAVLEYLVLDVDLIFLVSRKSAVQTQVPI 109
++ +Q PD + +V+D D++ L R+ ++T+ +
Sbjct: 147 LITEQFPDTAGAIASIVVDADVVSLDGRRDMIETEAEV 184
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 148 QEDKIYVQHKIFENRETIWRLL-NNNAHVFISG 243
Q +K+Y+Q ++ E +E +W LL ++ +V++ G
Sbjct: 289 QGEKMYIQTRMAEYKEELWELLKKDHTYVYMCG 321
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 288 VIRVCSGTSAAASSDAVRSLQEQGRLQVE 374
V+ VC G +AAA++ AV +++ R +VE
Sbjct: 96 VVPVCGGAAAAAAAAAVAAVESDPRNEVE 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,782,025
Number of Sequences: 37544
Number of extensions: 379894
Number of successful extensions: 1266
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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