Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0128
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal embroy...    78   5e-15
AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-depende...    57   1e-08
AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical...    57   1e-08
Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    29   4.1  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    29   4.1  
AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal
           embroygenesis protein 8 protein.
          Length = 662

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
 Frame = +1

Query: 34  MHLFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRL 210
           MHL++GCR+ + DY  ++EL     D  L+ L CAFSR QE KIYVQ +++E R+ IW  
Sbjct: 545 MHLYYGCRHPDHDYIYKDELAKFQEDEVLTHLVCAFSRAQEHKIYVQDRLWETRDRIWDA 604

Query: 211 LNNNAHVFISGNAK 252
           +N  AHV+I G+A+
Sbjct: 605 INVGAHVYICGDAR 618


>AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-dependent
           flavin reductase protein.
          Length = 585

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +1

Query: 40  LFFGCRYKEKDYHCREELEGMVGDGNLSLYCAFSRDQED-KIYVQHKIFENRETIWRLLN 216
           LFFGCR +  DY+  +E   + G   +++  AFSRD +  K+YVQHK+ EN   I R+L+
Sbjct: 483 LFFGCRSEHHDYYFSDEWPELSG---VAVIPAFSRDTDGRKVYVQHKMGENAGKIKRMLD 539

Query: 217 NNAHVFISGNA 249
             A VFI+G++
Sbjct: 540 LGAQVFIAGSS 550


>AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical
           protein Y113G7A.8 protein.
          Length = 585

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
 Frame = +1

Query: 40  LFFGCRYKEKDYHCREELEGMVGDGNLSLYCAFSRDQED-KIYVQHKIFENRETIWRLLN 216
           LFFGCR +  DY+  +E   + G   +++  AFSRD +  K+YVQHK+ EN   I R+L+
Sbjct: 483 LFFGCRSEHHDYYFSDEWPELSG---VAVIPAFSRDTDGRKVYVQHKMGENAGKIKRMLD 539

Query: 217 NNAHVFISGNA 249
             A VFI+G++
Sbjct: 540 LGAQVFIAGSS 550


>Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical
           protein C01G6.6a protein.
          Length = 682

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 40  LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 216
           LFFGCR    D     ELE  V +G L+ L    S  + +++    + + ++   +   +
Sbjct: 567 LFFGCRDSSVDAIYMSELEMFVSEGILTDLIICESEQKGERVQDGLRKYLDKVLPFLTAS 626

Query: 217 NNAHVFISGNAK 252
             + +FI G+AK
Sbjct: 627 TESKIFICGDAK 638


>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -3

Query: 541 VHHRIFL*RHLRSICGPRAPSTSXHRIQ*IVQF*SVVG----NLVKSAMLPIWSARH 383
           VHH+IFL   +  + G R PST+  ++   VQ  S+       L++S ML  W+  H
Sbjct: 151 VHHKIFLPCLIAVLRGKRIPSTTHDQLIACVQKMSIRATCQKELIQSGMLE-WAVNH 206


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -3

Query: 541 VHHRIFL*RHLRSICGPRAPSTSXHRIQ*IVQF*SVVG----NLVKSAMLPIWSARH 383
           VHH+IFL   +  + G R PST+  ++   VQ  S+       L++S ML  W+  H
Sbjct: 151 VHHKIFLPCLIAVLRGKRIPSTTHDQLIACVQKMSIRATCQKELIQSGMLE-WAVNH 206


>AF002198-7|AAF99935.1|  693|Caenorhabditis elegans Hypothetical
           protein F35F10.10 protein.
          Length = 693

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 588 IAVVYGFTLRSRQMKMFTIEFFYNAI 511
           I +  GFT+   Q  +F IE++YNA+
Sbjct: 623 IPIDEGFTIEYPQFSVFKIEYYYNAL 648


>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 94  EGMVGDGNLSLYCAFSRDQEDKIYVQHK-IFENRETIWRLLNNNAHVFI 237
           EG+VG   + +YC F  +  DK ++ +     N     R LN+ +H+F+
Sbjct: 261 EGLVGFNGVVMYCTFVVEVWDKKWIIYAGAASNLIVNLRALNSLSHLFV 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,623
Number of Sequences: 27780
Number of extensions: 303227
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)