Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0127
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      133   1e-31
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.20 
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777...    30   1.4  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.5  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    29   4.3  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   4.3  
01_05_0327 + 20984336-20985478                                         28   5.7  
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054...    28   7.6  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  133 bits (322), Expect = 1e-31
 Identities = 56/103 (54%), Positives = 79/103 (76%)
 Frame = +2

Query: 218 TLPRSIQVQDKEELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMG 397
           T     + + ++ELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +G
Sbjct: 62  TFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVG 121

Query: 398 DRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLHQATEA 526
           DRG  ARASG++A VI HNPD   +R+KLPSGAKK++  +  A
Sbjct: 122 DRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRA 164



 Score =  116 bits (280), Expect = 1e-26
 Identities = 54/81 (66%), Positives = 64/81 (79%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 216 VHFRDPYKFKTRKSSSLLPKG 278
           V FR P+++K +K   +  +G
Sbjct: 61  VTFRHPFRYKHQKELFVAAEG 81



 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 38/50 (76%), Positives = 42/50 (84%)
 Frame = +1

Query: 511 SSNRGMVGIVAGGGRIDKPILKAGRAYHKXKVKRNCWPYVXGVAMNPVEH 660
           SS R M+G VAGGGR +KP+LKAG AYHK +VKRNCWP V GVAMNPVEH
Sbjct: 160 SSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEH 209


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 543 WRWTY*QTYFESWKGIPQVQG 605
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>11_06_0325 +
           22376195-22377001,22377136-22377525,22377638-22377778,
           22377888-22378067,22378268-22378447,22378536-22378637,
           22378768-22378896,22379318-22379422,22379528-22379623
          Length = 709

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/63 (36%), Positives = 30/63 (47%)
 Frame = +2

Query: 383 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLHQATEAWSVLLLEVDVLT 562
           EEK+ +   L    G    +IG N   K T +KL  G +K     T+   VLL E +VL 
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499

Query: 563 NLF 571
           N F
Sbjct: 500 NYF 502


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 421 LWKLRHCDWT 450
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 543 WRWTY*QTYFESWKGIPQVQG 605
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 452 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 363
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>01_05_0327 + 20984336-20985478
          Length = 380

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -1

Query: 538 QYRPCLCCLMQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTL 359
           Q  P L  L+ N L S   +YS  LS      H  + +RG      + +F  +  H  T 
Sbjct: 274 QLLPVLLLLLLNFLPSSEPVYS--LSRSYPYEHKFQTTRGVTYYVKLPNFEEQYPHQSTE 331

Query: 358 RHSSNRH 338
           R +  RH
Sbjct: 332 RATLERH 338


>01_06_0677 -
           31104736-31104897,31105046-31105234,31105313-31105470,
           31105558-31105648,31105787-31105961,31106065-31106204,
           31106293-31106511,31106589-31106718,31107163-31107229,
           31107347-31107441,31107535-31107606,31107681-31107736,
           31107995-31108060,31108151-31108264,31108787-31109092
          Length = 679

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 389 KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLHQATEAWSVLLLE 547
           K  +    A+    F TV+G NPD +        GA+K++H   +    LL+E
Sbjct: 341 KFDEEPNYAKCISLFDTVVGPNPDIRPINT---DGAQKLIHLVGQKRGRLLME 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,450,417
Number of Sequences: 37544
Number of extensions: 433538
Number of successful extensions: 1203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)