Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0127
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)             145   3e-35
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)       145   3e-35
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)    42   3e-04
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   4.4  
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)                  28   7.7  

>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score =  145 bits (351), Expect = 3e-35
 Identities = 63/93 (67%), Positives = 78/93 (83%)
 Frame = +2

Query: 248 KEELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASG 427
           ++ELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SG
Sbjct: 72  RKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSG 131

Query: 428 NFATVIGHNPDAKRTRVKLPSGAKKVLHQATEA 526
           N+ATVI HN + KRTRVKLPSG KKV+  +  A
Sbjct: 132 NYATVISHNVEKKRTRVKLPSGIKKVIPSSNRA 164



 Score =  131 bits (317), Expect = 4e-31
 Identities = 61/81 (75%), Positives = 67/81 (82%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIR QRKGAGS+F SHTK RKGA  LR  DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1   MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60

Query: 216 VHFRDPYKFKTRKSSSLLPKG 278
           V FRDPY++K RK   +  +G
Sbjct: 61  VVFRDPYRYKLRKELFVATEG 81



 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 43/50 (86%), Positives = 45/50 (90%)
 Frame = +1

Query: 511 SSNRGMVGIVAGGGRIDKPILKAGRAYHKXKVKRNCWPYVXGVAMNPVEH 660
           SSNR +VGIVAGGGRIDKP+LKAGRAYHK K KRNCWP V GVAMNPVEH
Sbjct: 160 SSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEH 209


>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
          Length = 123

 Score =  145 bits (351), Expect = 3e-35
 Identities = 63/93 (67%), Positives = 78/93 (83%)
 Frame = +2

Query: 248 KEELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASG 427
           ++ELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SG
Sbjct: 30  RKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSG 89

Query: 428 NFATVIGHNPDAKRTRVKLPSGAKKVLHQATEA 526
           N+ATVI HN + KRTRVKLPSG KKV+  +  A
Sbjct: 90  NYATVISHNVEKKRTRVKLPSGIKKVIPSSNRA 122



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/39 (69%), Positives = 32/39 (82%)
 Frame = +3

Query: 162 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKSSSLLPKG 278
           GVVK+IIHDPGRGAPLAVV FRDPY++K RK   +  +G
Sbjct: 1   GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEG 39


>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
          Length = 222

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
 Frame = +2

Query: 245 DKEELFIAPEGLYTGQFVYC--GKK---ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGR 409
           ++E+L IAP+ +  G  +    GK    A L+ G+  P+  +P GT+V N+E   G   +
Sbjct: 82  NQEKLVIAPDEIQVGDVMTASRGKPESLALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQ 141

Query: 410 LARASGNFATVIGHNPDAKRTRVKLPSGAKK 502
           LARA+G  A +I    +     V+LPS  +K
Sbjct: 142 LARAAGTSAQLIRKTNET--AVVRLPSKVEK 170


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +1

Query: 142 NVMDTSRELLRI*SMTLVEVHLWLLYTSAIHTSSRQGRALHCSRRALHRPICLL 303
           N++++    L+  + T V ++  +  +S   T++ QGRA H SR  LHRP  L+
Sbjct: 132 NIIESKNSCLQQRNETAVRLNGHVKQSS---TNNSQGRAEHNSRTTLHRPKSLI 182


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 581 PAFKIGLSIRPPPATIPTMPLLLDAEPSWLQTVA 480
           P+F   L   PPP  + ++PLLL A P  LQ+ A
Sbjct: 594 PSFHHNLRPTPPPLPL-SIPLLLQATPPHLQSTA 626


>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 153 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHDP*XRPVNLTS 10
           I +V +  + +   R++SS C KRKL R    E+ + D   R + L +
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKDLKERNIELNA 517


>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 469 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 296
           T SI ++ + +   + GTC+     +  FK+ H     + H  + H ++N   C +  ++
Sbjct: 76  THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135

Query: 295 KLACV 281
              CV
Sbjct: 136 NQRCV 140


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 390  FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SPSG 268
            F+S L T +P+   P G+TF T +V F    +NW + + SG
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSG 1102


>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
          Length = 766

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = +2

Query: 218 TLPRSIQVQDKEELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMG 397
           T+P++  +Q+KEEL     G +  Q VY  +++ L + +   V  + E  +    +E   
Sbjct: 533 TIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIVEQRVTDGTDEIHS 592

Query: 398 DRGRLARASGNFATVIGHNPDAK 466
               LA+ +    T+  H    K
Sbjct: 593 TDVNLAKYNLPDGTIGDHTESIK 615


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,126,727
Number of Sequences: 59808
Number of extensions: 497691
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)