Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0127
         (661 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein ...   157   4e-40
AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         30   0.056
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   2.8  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    25   2.8  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    25   2.8  
DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor...    24   4.9  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.9  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   6.5  
CR954257-4|CAJ14155.1|  196|Anopheles gambiae predicted protein ...    23   8.5  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   8.5  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   8.5  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   8.5  

>AF164152-1|AAD47076.1|  261|Anopheles gambiae ribosomal protein L8
           protein.
          Length = 261

 Score =  157 bits (380), Expect = 4e-40
 Identities = 69/92 (75%), Positives = 81/92 (88%)
 Frame = +2

Query: 251 EELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGN 430
           ++LFIA EG+YTGQFVYCG++A L++GNV+P+G MPEGTIVCNLEEK GDRG+LAR SGN
Sbjct: 73  KQLFIAAEGMYTGQFVYCGRRAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGN 132

Query: 431 FATVIGHNPDAKRTRVKLPSGAKKVLHQATEA 526
           +A+VI HNPD KRTRVKLPSGAKKVL  A  A
Sbjct: 133 YASVIAHNPDTKRTRVKLPSGAKKVLPSANRA 164



 Score =  134 bits (325), Expect = 2e-33
 Identities = 62/81 (76%), Positives = 69/81 (85%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIRAQRKGAGSVF +HTKKRKG PKLR LDYAERHGY+KGVVK II DPGRGAPLAV
Sbjct: 1   MGRVIRAQRKGAGSVFRAHTKKRKGQPKLRHLDYAERHGYLKGVVKQIIQDPGRGAPLAV 60

Query: 216 VHFRDPYKFKTRKSSSLLPKG 278
           V+FRDPY+F+  K   +  +G
Sbjct: 61  VNFRDPYRFRLSKQLFIAAEG 81



 Score =  101 bits (241), Expect = 3e-23
 Identities = 45/50 (90%), Positives = 46/50 (92%)
 Frame = +1

Query: 511 SSNRGMVGIVAGGGRIDKPILKAGRAYHKXKVKRNCWPYVXGVAMNPVEH 660
           S+NR MVGIVAGGGRIDKPILKAGRAYHK KVKRNCWP V GVAMNPVEH
Sbjct: 160 SANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEH 209


>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 30.3 bits (65), Expect = 0.056
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 478 KATVWSQEGSASSNRGMVGIVAGGGRIDKPILKAGRAYHK 597
           K  +W    +AS+ +  +G V GG   D  IL  GRAYH+
Sbjct: 73  KQLIWD---TASAGQVPLGAVVGGHTSDGEILYVGRAYHE 109


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 513 KQQRHGRYCCWRWTY 557
           +QQ+HG++CC R ++
Sbjct: 280 QQQQHGQHCCCRGSH 294


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 144 RHGYIKGVVKDIIHDP 191
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 144 RHGYIKGVVKDIIHDP 191
           R+  +K ++KDI+HDP
Sbjct: 737 RYTMLKDMIKDIMHDP 752


>DQ989013-1|ABK97614.1|  378|Anopheles gambiae gustatory receptor 24
           protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 415 CQTTSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLA 287
           C+T SIT  +        LRH      +S ++S +L  ++KLA
Sbjct: 180 CETLSITAKILAEDFQRALRHVGPAAKVSEYRSLWL-RLSKLA 221


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 437 TVIGHNPDAKRTRVKLPSGAKKVLHQATEAWSVLLLEV 550
           +V G NPDAKR    L S   K++         L +++
Sbjct: 16  SVCGGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKI 53


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 501 RFCIKQQRHGRYCCWRW 551
           +FCI++ R G Y  WR+
Sbjct: 5   KFCIEKLRSGGYETWRF 21


>CR954257-4|CAJ14155.1|  196|Anopheles gambiae predicted protein
           protein.
          Length = 196

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 209 GCCTLPRSIQVQDKEE 256
           GCC LP +   Q K++
Sbjct: 16  GCCALPANTNAQTKQD 31


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 563 LSIRPPPATIPTM 525
           + +RPPP  +PTM
Sbjct: 114 MGMRPPPMMVPTM 126


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 109  PFLFFV*ETKTEPAPLR*ARITRPMXKTRQSHL 11
            P   +    K +P+PL  A + +PM ++ +S L
Sbjct: 1275 PHSLYAIPNKVKPSPLAGAAVPKPMDRSLRSIL 1307


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 649 GSWQHXVHMASSYV*PXTCGMPFQLSK*VCQY 554
           GS  H     SSYV    CG P ++    C++
Sbjct: 504 GSEGHKARDCSSYVKCAACGGPHRIGHMSCEH 535


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,295
Number of Sequences: 2352
Number of extensions: 17232
Number of successful extensions: 38
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)