Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0127
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   135   3e-32
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    40   0.001
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   6.8  
AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical...    28   6.8  
AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical...    28   6.8  
U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  135 bits (326), Expect = 3e-32
 Identities = 54/88 (61%), Positives = 73/88 (82%)
 Frame = +2

Query: 263 IAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATV 442
           +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+ATV
Sbjct: 77  VAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATV 136

Query: 443 IGHNPDAKRTRVKLPSGAKKVLHQATEA 526
           I HNPD K+TR++LPSGAKKV+     A
Sbjct: 137 IAHNPDTKKTRIRLPSGAKKVVQSVNRA 164



 Score =  131 bits (316), Expect = 5e-31
 Identities = 59/81 (72%), Positives = 68/81 (83%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 216 VHFRDPYKFKTRKSSSLLPKG 278
           + FRDPYK+KT K++ +  +G
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEG 81



 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/50 (76%), Positives = 42/50 (84%)
 Frame = +1

Query: 511 SSNRGMVGIVAGGGRIDKPILKAGRAYHKXKVKRNCWPYVXGVAMNPVEH 660
           S NR M+G+VAGGGR DKP+LKAGR+YHK K KRN WP V GVAMNPVEH
Sbjct: 160 SVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEH 209


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +2

Query: 329 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 505
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP   +  
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217

Query: 506 LHQATEAWSVLLLEVDVLTNLF*KLEGH 589
           LH+   A    L   D+   +F   + H
Sbjct: 218 LHRTCMATVGRLSHADIDGKIFGSAQMH 245


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +2

Query: 443 IGHNPDAKRTRVKLPSGAKKVLHQATEAWSVLLLE 547
           IGH  D +RTR  LP+G KKVL Q  +   +LL++
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 27  VFXMGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 146
           V  +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 461 VHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 147 HGYIKGVVKDIIHDPGRGAPLAVVHFR 227
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 147 HGYIKGVVKDIIHDPGRGAPLAVVHFR 227
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 84  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 209
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical
           protein Y60A3A.6 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 147 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKSSSLL 269
           HG    +   ++H P R A L ++H +     KT  +S+++
Sbjct: 283 HGVFTTLTMIMVHTPYRHATLEMLHLKSKRSMKTSNNSNIM 323


>AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical
           protein Y60A3A.4 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 147 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKSS 260
           HG    +V  I+H P R A  +++H +     KT  +S
Sbjct: 280 HGVCTTLVMIIVHKPYRQATFSILHLKSVRPLKTENNS 317


>U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical
           protein T27F7.2c protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -2

Query: 558 NTSTSSNNTDHASVA*CRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSR 379
           NT+++      AS      FL   GS T+    SG C          R RRP+S +FSS 
Sbjct: 5   NTASTMTEKRSASTVFLNRFLGKKGSQTVDE--SGQCK---------RKRRPVSAVFSSA 53

Query: 378 LHTMVPS 358
           +H +  S
Sbjct: 54  IHRLSSS 60


>U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical
           protein T27F7.2b protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -2

Query: 558 NTSTSSNNTDHASVA*CRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSR 379
           NT+++      AS      FL   GS T+    SG C          R RRP+S +FSS 
Sbjct: 374 NTASTMTEKRSASTVFLNRFLGKKGSQTVDE--SGQCK---------RKRRPVSAVFSSA 422

Query: 378 LHTMVPS 358
           +H +  S
Sbjct: 423 IHRLSSS 429


>U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical
           protein T27F7.2a protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -2

Query: 558 NTSTSSNNTDHASVA*CRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSR 379
           NT+++      AS      FL   GS T+    SG C          R RRP+S +FSS 
Sbjct: 384 NTASTMTEKRSASTVFLNRFLGKKGSQTVDE--SGQCK---------RKRRPVSAVFSSA 432

Query: 378 LHTMVPS 358
           +H +  S
Sbjct: 433 IHRLSSS 439


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,687
Number of Sequences: 27780
Number of extensions: 360338
Number of successful extensions: 922
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)