Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0127
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 137 7e-33
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 136 9e-33
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 131 5e-31
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 44 7e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 44 7e-05
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 32 0.29
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 4.8
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 28 4.8
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 28 4.8
At2g26420.1 68415.m03170 1-phosphatidylinositol-4-phosphate 5-ki... 28 6.3
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 8.4
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 137 bits (331), Expect = 7e-33
Identities = 58/93 (62%), Positives = 78/93 (83%)
Frame = +2
Query: 248 KEELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASG 427
++ELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG
Sbjct: 73 QKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASG 132
Query: 428 NFATVIGHNPDAKRTRVKLPSGAKKVLHQATEA 526
++A VI HNP++ TRVKLPSG+KK+L A A
Sbjct: 133 DYAIVIAHNPESNTTRVKLPSGSKKILPSACRA 165
Score = 109 bits (263), Expect = 1e-24
Identities = 53/82 (64%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +3
Query: 36 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 212
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 213 VVHFRDPYKFKTRKSSSLLPKG 278
V FR P+++ +K + +G
Sbjct: 61 RVAFRHPFRYMKQKELFVAAEG 82
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/50 (74%), Positives = 40/50 (80%)
Frame = +1
Query: 511 SSNRGMVGIVAGGGRIDKPILKAGRAYHKXKVKRNCWPYVXGVAMNPVEH 660
S+ R M+G VAGGGR +KP LKAG AYHK K KRNCWP V GVAMNPVEH
Sbjct: 161 SACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEH 210
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 136 bits (330), Expect = 9e-33
Identities = 59/103 (57%), Positives = 80/103 (77%)
Frame = +2
Query: 218 TLPRSIQVQDKEELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMG 397
T + + ++ELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +G
Sbjct: 62 TFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVG 121
Query: 398 DRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLHQATEA 526
DRG LARASG++A VI HNPD+ TR+KLPSG+KK++ A
Sbjct: 122 DRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRA 164
Score = 117 bits (282), Expect = 6e-27
Identities = 55/81 (67%), Positives = 64/81 (79%)
Frame = +3
Query: 36 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 216 VHFRDPYKFKTRKSSSLLPKG 278
V FR P++FK +K + +G
Sbjct: 61 VTFRHPFRFKKQKELFVAAEG 81
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = +1
Query: 511 SSNRGMVGIVAGGGRIDKPILKAGRAYHKXKVKRNCWPYVXGVAMNPVEH 660
S R M+G VAGGGR +KP+LKAG AYHK +VKRN WP V GVAMNPVEH
Sbjct: 160 SGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEH 209
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 131 bits (316), Expect = 5e-31
Identities = 55/93 (59%), Positives = 75/93 (80%)
Frame = +2
Query: 248 KEELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASG 427
++ELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG
Sbjct: 72 QKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASG 131
Query: 428 NFATVIGHNPDAKRTRVKLPSGAKKVLHQATEA 526
++A VI HNPD +R+KLPSG+KK++ A
Sbjct: 132 DYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRA 164
Score = 117 bits (282), Expect = 6e-27
Identities = 55/81 (67%), Positives = 64/81 (79%)
Frame = +3
Query: 36 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 216 VHFRDPYKFKTRKSSSLLPKG 278
V FR P++FK +K + +G
Sbjct: 61 VAFRHPFRFKKQKELFVAAEG 81
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/50 (74%), Positives = 41/50 (82%)
Frame = +1
Query: 511 SSNRGMVGIVAGGGRIDKPILKAGRAYHKXKVKRNCWPYVXGVAMNPVEH 660
S R M+G VAGGGR +KP+LKAG AYHK +VKRNCWP V GVAMNPVEH
Sbjct: 160 SGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEH 209
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +2
Query: 326 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 505
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 506 LHQATEA 526
++ A
Sbjct: 118 INAKCRA 124
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +2
Query: 326 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 505
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 506 LHQATEA 526
++ A
Sbjct: 118 INAKCRA 124
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 595 KXKVKRNCWPYVXGVA-MNPVEH 660
K +KRN W V GVA MNPVEH
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEH 433
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 543 WRWTY*QTYFESWKGIPQVQG 605
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -1
Query: 406 TSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEPFGSNEELF 251
+++T+ I NG SSN++ + F+ ST+N LA VE S+++ +
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANSSKKFY 187
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 593 WYALPAFKIGLSIRPPPATIPTMPLLLDAEPSW 495
W L F++G PPPAT P + D P W
Sbjct: 409 WTGLEHFRVGRYDPPPPATEPE-DYVYDLRPRW 440
>At2g26420.1 68415.m03170 1-phosphatidylinositol-4-phosphate
5-kinase, putative / PIP kinase, putative /
PtdIns(4)P-5-kinase, putative / diphosphoinositide
kinase, putative similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 705
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 337 HISNFKSCFLSTINKLACVEPFGSNEELFLVL-NLYGS 227
H+S +K+ ++ + CV+P G + F+V+ NL+ S
Sbjct: 462 HVSKYKNSLVTKFFGVHCVKPVGGQKTRFIVMGNLFCS 499
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 436 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 323
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,245,100
Number of Sequences: 28952
Number of extensions: 334413
Number of successful extensions: 906
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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