Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0126
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1ZU59 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q9MTD9 Cluster: Ribosomal protein S5; n=1; Toxoplasma g...    33   6.4  

>UniRef50_Q1ZU59 Cluster: Putative uncharacterized protein; n=1;
           Vibrio angustum S14|Rep: Putative uncharacterized
           protein - Vibrio angustum S14
          Length = 84

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 307 CHILIYIYYNALISDXIFYKNYLTAFRRTIWHKCYIYIFIL*MVY*IGIMIFLRVIL 137
           C +L+ IY+NA     IF  N LT+     +   Y+ IF+      + ++ FL +++
Sbjct: 16  CFLLLQIYFNATFYSIIFITNVLTSRHMVAFFDVYVNIFVFNQCL-VFVVSFLEILI 71


>UniRef50_Q9MTD9 Cluster: Ribosomal protein S5; n=1; Toxoplasma
           gondii|Rep: Ribosomal protein S5 - Toxoplasma gondii
          Length = 268

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = -2

Query: 292 YIYYNALISDXIFYKNYLTAFRRTIWHKCYIYIFIL*MVY*IGIMIFLRVIL*ICSFSKA 113
           +++Y  ++ D IFYK Y     +T W+   I++F+L + +   + I +       S  K 
Sbjct: 39  FLFYLYILKDFIFYK-YFFFKNKTYWYLINIFLFLLNLNFLKLLNININNSFNTISKIKK 97

Query: 112 ELACYYVFV 86
            ++ YY+++
Sbjct: 98  NISLYYIYI 106


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,216,088
Number of Sequences: 1657284
Number of extensions: 7970932
Number of successful extensions: 12120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12116
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)