Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0126
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   8.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   8.2  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 349 LFKVYIEQEQNCXVTAKKILHVXLTAVMLKFDP 447
           LF +Y++      +   K++ V  TAV+  F P
Sbjct: 133 LFFIYVQPSATFSLDLNKVVSVFYTAVIPMFSP 165


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 280 NALISDXIFYKNYLTAFRRTIWHKC 206
           + L  D +F+K+++T   +T   KC
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKC 78


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 280 NALISDXIFYKNYLTAFRRTIWHKC 206
           + L  D +F+K+++T   +T   KC
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCKKC 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,919
Number of Sequences: 438
Number of extensions: 2924
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)