Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0126
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68650.1 68414.m07844 expressed protein contains Pfam profile...    30   1.6  
At1g25520.1 68414.m03169 expressed protein contains Pfam profile...    27   8.6  

>At1g68650.1 68414.m07844 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 228

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 123 SRKLSLHVTTFLFF-YVSWSXQDG 55
           SRK + H+TTFLFF +  WS  DG
Sbjct: 67  SRKWTHHITTFLFFGFGLWSLWDG 90


>At1g25520.1 68414.m03169 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 230

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 123 SRKLSLHVTTFLFF-YVSWSXQDG 55
           SRK + H+TT LFF +  WS  DG
Sbjct: 67  SRKWTHHITTLLFFGFGLWSLWDG 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,525
Number of Sequences: 28952
Number of extensions: 172021
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)