Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0125
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4AMU4 Cluster: TPR domain protein; n=1; Flavobacterial...    33   4.6  
UniRef50_Q59L51 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_O16329 Cluster: Seven tm receptor protein 143; n=1; Cae...    33   8.0  

>UniRef50_A4AMU4 Cluster: TPR domain protein; n=1; Flavobacteriales
           bacterium HTCC2170|Rep: TPR domain protein -
           Flavobacteriales bacterium HTCC2170
          Length = 689

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 169 GWYSRNKNTFESTYNQRHLLLAEHYYNVLP 258
           GWY++  +T ++  N R+LL    YYN+LP
Sbjct: 533 GWYTQLMHTQQTDSNTRNLLFTSLYYNLLP 562


>UniRef50_Q59L51 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 123

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 15/50 (30%), Positives = 31/50 (62%)
 Frame = +2

Query: 242 TTMCCPSSKSRFIVTTQ*VSRRILSGVAIPILIQRSTALARTSVSKLSQV 391
           T++C P++++R ++T     R IL+G   P ++ +S  +ART ++ L  +
Sbjct: 74  TSICQPNTQTRRVLTGTRQKRDILTGSTRPFVVTQSLPVARTIITILEPI 123


>UniRef50_O16329 Cluster: Seven tm receptor protein 143; n=1;
           Caenorhabditis elegans|Rep: Seven tm receptor protein
           143 - Caenorhabditis elegans
          Length = 336

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 212 LYVDSNVFLLRLYHPCTFAAHCTRSLRT*CYCNKFVLFFSFSKYNIYYRYVII 54
           +++  ++F++ L  P TF       + T  YC+ F L  S      YYRY+ +
Sbjct: 67  MHIKQSMFIVMLDSPFTFDVSTGNEI-TCLYCSSFALCISLLAAQFYYRYIAL 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,370,322
Number of Sequences: 1657284
Number of extensions: 9439492
Number of successful extensions: 23424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23417
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)