Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0125
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    28   1.4  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    26   4.2  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   7.3  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   7.3  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    25   7.3  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.3  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   9.7  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   9.7  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 550 VMELGNSRYSDALHLYAVKESRSIDGSLFSYLFADSLRGYS 428
           V+ +  SR SDA+ L+A    R    ++  ++FA+  R YS
Sbjct: 147 VVFIDRSRRSDAIQLFAKAARRMRKENISIWVFAEGTRSYS 187


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 311 LSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKL 424
           +SG A+ +  +R+T L + SVS L  + P+     SK+
Sbjct: 391 ISGSAVRMAEERNTTLDKLSVSDLQSLHPLFDEDVSKV 428


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 388 LREFANTSPSKSSASLNQDRNRDS*ENPARNS 293
           L E  N  PS+ SA ++    +D+ ENPA  S
Sbjct: 66  LDEEENGKPSQISAFISNGHQKDTLENPAIES 97


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 136 SERVQWAAKVHGWYSRNKN 192
           SE +QW  ++ GW+   KN
Sbjct: 630 SEDIQWRKRIDGWFFSFKN 648


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 89  RKRKKARIYYNNITFVVSEYSGLQKCM 169
           ++ K  R+Y  NI F+ +   GLQ C+
Sbjct: 143 QESKLLRLYTQNIDFLETRLEGLQTCI 169


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 33   ISQTNKPYYYISIINIIFGEREKKHEFIT 119
            +S  N PYY + ++ ++FG+   +H+  T
Sbjct: 935  LSNPNTPYY-LKLLKVLFGQVPDRHKDFT 962


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 214 DCM*IQTCFCYDCTIHALLQPTVLAHYERNVIVINS 107
           DC+ ++  F +D T    + P V A+Y+  V + +S
Sbjct: 276 DCVHVKKLFGFDPTKTFQVPPEVYAYYKERVAIASS 311


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 154 AAKVHGWYSRNKNTFESTYNQRHLLLA 234
           A ++HGW + N   F   +++   LLA
Sbjct: 170 ARRIHGWLAHNNAIFSVNFSKDDSLLA 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,543
Number of Sequences: 5004
Number of extensions: 43267
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)