Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0125
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016433-2|AAB65389.1| 336|Caenorhabditis elegans Seven tm rece... 33 0.24
AF016433-3|AAB65390.1| 336|Caenorhabditis elegans Seven tm rece... 32 0.41
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 27 8.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 8.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 8.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 8.9
>AF016433-2|AAB65389.1| 336|Caenorhabditis elegans Seven tm
receptor protein 143 protein.
Length = 336
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 212 LYVDSNVFLLRLYHPCTFAAHCTRSLRT*CYCNKFVLFFSFSKYNIYYRYVII 54
+++ ++F++ L P TF + T YC+ F L S YYRY+ +
Sbjct: 67 MHIKQSMFIVMLDSPFTFDVSTGNEI-TCLYCSSFALCISLLAAQFYYRYIAL 118
>AF016433-3|AAB65390.1| 336|Caenorhabditis elegans Seven tm
receptor protein 144 protein.
Length = 336
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 212 LYVDSNVFLLRLYHPCTFAAHCTRSLRT*CYCNKFVLFFSFSKYNIYYRYVII 54
+++ ++F++ L P TF + T YC+ F L S YYRY+ +
Sbjct: 67 MHIKQSMFIVMLDGPYTFEIAVGNEI-TCLYCSAFALCISLLAAQFYYRYIAV 118
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 133 RSERVQWAAKVHGWYSRNKNTFESTYN 213
R+ R WAA+ + +R+K TFE +N
Sbjct: 204 RAVRTNWAARKNSEENRDKLTFEQVFN 230
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 4727 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 4774
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 4888 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 4935
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 5244 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 5291
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 4727 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 4774
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 4888 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 4935
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 5244 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 5291
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 5405 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 5452
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 4727 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 4774
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 4888 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 4935
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 5244 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 5291
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 308 ILSGVAIPILIQRSTALARTSVSKLSQVEPVSSPTHSKLTGIAS*AISE 454
+ SG+ + +L++ S + TS+ K S P PT KL + S SE
Sbjct: 5405 VFSGLELDLLMECSEYVT-TSIQKGSTAAPAQEPTVEKLAPVESKETSE 5452
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,637,266
Number of Sequences: 27780
Number of extensions: 240577
Number of successful extensions: 615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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