Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0125
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.0  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   7.9  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 624 NKRQNNFK*LFVNVINL 574
           N   NN+K L+ N+IN+
Sbjct: 343 NNNYNNYKKLYYNIINI 359


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 624 NKRQNNFK*LFVNVINL 574
           N   NN+K L+ N+IN+
Sbjct: 325 NNYNNNYKPLYYNIINI 341


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +2

Query: 170 DGTVVTKTRLNLHTISAICY*QSITTMCCPSSKSRFIV 283
           +GT+  K+   + T   +   Q + TM C    +R+ V
Sbjct: 407 EGTIPVKSSEGIQTWDGVLMGQRLLTMSCSDKIARWNV 444


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = +2

Query: 149 SGLQKCMDGTVVTKTRLNLHTISAIC 226
           S +  C+    + + +  LHT+ ++C
Sbjct: 8   SAICVCVSAMTLDELKSGLHTVQSVC 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,090
Number of Sequences: 438
Number of extensions: 3113
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)