Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0124
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    33   0.21 
08_01_0510 + 4455805-4456637,4457837-4457912                           30   1.5  
04_04_0188 - 23433753-23436572                                         29   2.6  
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           29   3.4  
03_03_0188 + 15269347-15270213                                         29   3.4  
04_04_0659 + 27008867-27008963,27011209-27011280,27011833-270119...    29   4.5  
09_04_0652 - 19227686-19227926,19229368-19232294                       28   6.0  
03_05_1166 - 30876802-30876899,30877233-30878685                       28   6.0  

>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +2

Query: 251 KMDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIREL--VEDSNLLKMWIS 424
           K D   +SS S +    V  LP+G  PC K  S LI  V P   E+  V    L  + ++
Sbjct: 293 KRDELYISSRSML--ATVLSLPSGLPPCIKSPSKLIEQVLPFAEEIVGVVMDELASLDMT 350

Query: 425 FMIPKIEDGNNFGVSIQEDTLAEIQSG 505
                +ED +NF   +++  L  + +G
Sbjct: 351 VSSKNLEDLSNFFKVLRQQALRWVPNG 377


>08_01_0510 + 4455805-4456637,4457837-4457912
          Length = 302

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 60  KDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPI 203
           K S  L+ E+  +KG  ++I  L + L   N   R L+DV +DL+ P+
Sbjct: 19  KLSKLLEDEYAKLKGVQQQIAFLRDELRAMNATLRVLADVEEDLDPPV 66


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 485 LAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLSLW--L 658
           LA++  GR   AA     + + I    ++   A+   +D   R  RE+ +K+Y+S W  +
Sbjct: 278 LAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYIS-WNSM 336

Query: 659 VMCEIRN 679
           + C ++N
Sbjct: 337 LSCYVQN 343


>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 263  SELSSNSTIEGTR-VYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWIS 424
            SEL SN T+EGT+ V  L    +P +     L   + P    +++   L++MWI+
Sbjct: 1081 SELESNPTLEGTKQVLTLSYNDLPYHLKACFLYLSIFPE-NHVIKRGPLVRMWIA 1134


>03_03_0188 + 15269347-15270213
          Length = 288

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 135 LLETSNFQNRNLSDVHQDLNIPIPTPPA-TSNNEPNAKRQRWTHR 266
           LL TS+  +  +S        P P PPA TSNN+P  KR R + R
Sbjct: 56  LLHTSSSSSATMSP--SQAPPPHPPPPAPTSNNKPPKKRPRASRR 98


>04_04_0659 +
           27008867-27008963,27011209-27011280,27011833-27011907,
           27012071-27012181,27012609-27012713,27012997-27013049,
           27013549-27013674,27013742-27013861
          Length = 252

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 134 ITRDIKLSKSEFIGRTSGFKHSNTNTTCDVKQ*AKC*TSKMDSSELSSNSTIEG 295
           + + IK +KS+      G   +    T +  Q  +C + ++DS EL  N+T+EG
Sbjct: 102 MAKHIKETKSQTTEVVPGADRTKAEVTRN-SQSERCGSDRIDSEELRRNNTVEG 154


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 174 DVHQDLNIPIPT--PPATSNNEPNAKRQRWTHR 266
           D   DL++P+P+  PPA S + P AKR + + R
Sbjct: 367 DQFLDLSLPVPSRRPPAKSVSSPPAKRNKQSLR 399


>03_05_1166 - 30876802-30876899,30877233-30878685
          Length = 516

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 195 IPIPTPPATSNNEPNAKRQRWTHRSYPATQP*KEHGFMYCRMVQYPATSHS 347
           +P P PP      PN   + W H   P     KE    +C  V++ ++SH+
Sbjct: 224 LPPPPPPPREKMYPNPSGEPW-HTRKPRFS--KETPASFCHHVKFTSSSHA 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,325
Number of Sequences: 37544
Number of extensions: 361947
Number of successful extensions: 1078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)