Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0124
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 78  KAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNE 233
           KAE ++ K FPE++ +L+ LL++  F    +  V  D  IPI  P +  +N+
Sbjct: 5   KAEEVVTKFFPERVTELDNLLKSGMFALNKIPKVQADSIIPISHPNSDHSND 56


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 96   IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIP---TPPATSNNEPNAKRQR 254
            I+   EK+ K NE +E    +N  LSD+  +LN  I         S+++PN K Q+
Sbjct: 1947 IEEMREKMRKANEEIEKILSKNSKLSDILNELNSGIENILNEETLSDSDPNVKLQK 2002


>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 245 TSKMDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLI 358
           T ++DS   + N+ I+ T     P+GS    KP+ D +
Sbjct: 635 TVRVDSLGPTENNKIQATYTVTFPSGSAATLKPIDDAV 672


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,156
Number of Sequences: 59808
Number of extensions: 413144
Number of successful extensions: 1102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)