Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0124
         (680 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069688-1|AAL39833.1|  245|Drosophila melanogaster LD45860p pro...   229   2e-60
AF215730-1|AAF19529.1|  245|Drosophila melanogaster proteasome r...   229   2e-60
AE014298-1865|AAF48241.1|  245|Drosophila melanogaster CG1591-PA...   229   2e-60
X56799-1|CAA40135.1| 1365|Drosophila melanogaster supressor two ...    29   4.5  
AE014298-561|AAF45895.3|  398|Drosophila melanogaster CG32779-PA...    29   4.5  
AE013599-1626|AAF58433.1| 1368|Drosophila melanogaster CG3905-PA...    29   4.5  

>AY069688-1|AAL39833.1|  245|Drosophila melanogaster LD45860p
           protein.
          Length = 245

 Score =  229 bits (561), Expect = 2e-60
 Identities = 108/131 (82%), Positives = 119/131 (90%)
 Frame = +2

Query: 287 IEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGV 466
           + G  V  LP G+VPCNKPL ++I +VKP IR+LVEDSNLLKMWISFMIPKIEDGNNFGV
Sbjct: 87  VSGQPVMGLPAGTVPCNKPLCEMIKVVKPIIRKLVEDSNLLKMWISFMIPKIEDGNNFGV 146

Query: 467 SIQEDTLAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYL 646
           SIQEDTLAEIQ+  SEAAAFFDQISRYF+SRAK+VSKVAKYPHIDDYRRAV ELDEKEYL
Sbjct: 147 SIQEDTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYPHIDDYRRAVVELDEKEYL 206

Query: 647 SLWLVMCEIRN 679
           SLWLV+CE+RN
Sbjct: 207 SLWLVVCEVRN 217



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 42/63 (66%), Positives = 46/63 (73%)
 Frame = +3

Query: 45  KVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATS 224
           KVQ+YKDSL LKAE LI KGFPE IV+LNELL T  F  RN  +VHQDLNIP+  PP   
Sbjct: 8   KVQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFEEVHQDLNIPV-LPPLLV 66

Query: 225 NNE 233
            NE
Sbjct: 67  KNE 69


>AF215730-1|AAF19529.1|  245|Drosophila melanogaster proteasome
           regulator dREG protein.
          Length = 245

 Score =  229 bits (561), Expect = 2e-60
 Identities = 108/131 (82%), Positives = 119/131 (90%)
 Frame = +2

Query: 287 IEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGV 466
           + G  V  LP G+VPCNKPL ++I +VKP IR+LVEDSNLLKMWISFMIPKIEDGNNFGV
Sbjct: 87  VSGQPVMGLPAGTVPCNKPLCEMIKVVKPIIRKLVEDSNLLKMWISFMIPKIEDGNNFGV 146

Query: 467 SIQEDTLAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYL 646
           SIQEDTLAEIQ+  SEAAAFFDQISRYF+SRAK+VSKVAKYPHIDDYRRAV ELDEKEYL
Sbjct: 147 SIQEDTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYPHIDDYRRAVVELDEKEYL 206

Query: 647 SLWLVMCEIRN 679
           SLWLV+CE+RN
Sbjct: 207 SLWLVVCEVRN 217



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 42/63 (66%), Positives = 46/63 (73%)
 Frame = +3

Query: 45  KVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATS 224
           KVQ+YKDSL LKAE LI KGFPE IV+LNELL T  F  RN  +VHQDLNIP+  PP   
Sbjct: 8   KVQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFEEVHQDLNIPV-LPPLLV 66

Query: 225 NNE 233
            NE
Sbjct: 67  KNE 69


>AE014298-1865|AAF48241.1|  245|Drosophila melanogaster CG1591-PA
           protein.
          Length = 245

 Score =  229 bits (561), Expect = 2e-60
 Identities = 108/131 (82%), Positives = 119/131 (90%)
 Frame = +2

Query: 287 IEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGV 466
           + G  V  LP G+VPCNKPL ++I +VKP IR+LVEDSNLLKMWISFMIPKIEDGNNFGV
Sbjct: 87  VSGQPVMGLPAGTVPCNKPLCEMIKVVKPIIRKLVEDSNLLKMWISFMIPKIEDGNNFGV 146

Query: 467 SIQEDTLAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYL 646
           SIQEDTLAEIQ+  SEAAAFFDQISRYF+SRAK+VSKVAKYPHIDDYRRAV ELDEKEYL
Sbjct: 147 SIQEDTLAEIQTVESEAAAFFDQISRYFLSRAKVVSKVAKYPHIDDYRRAVVELDEKEYL 206

Query: 647 SLWLVMCEIRN 679
           SLWLV+CE+RN
Sbjct: 207 SLWLVVCEVRN 217



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 42/63 (66%), Positives = 46/63 (73%)
 Frame = +3

Query: 45  KVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATS 224
           KVQ+YKDSL LKAE LI KGFPE IV+LNELL T  F  RN  +VHQDLNIP+  PP   
Sbjct: 8   KVQEYKDSLILKAELLITKGFPENIVRLNELLATPIFNERNFEEVHQDLNIPV-LPPLLV 66

Query: 225 NNE 233
            NE
Sbjct: 67  KNE 69


>X56799-1|CAA40135.1| 1365|Drosophila melanogaster supressor two of
           zeste protein.
          Length = 1365

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +3

Query: 69  LKLKAEHLIIKGFPEKIVKLN-ELLETSNFQNRNLSDVHQDLNIPI----PTPPATSNNE 233
           L  K  H +  G  + + KL  +   TS   NR L +  + +N  +    PTPP T   E
Sbjct: 542 LDFKRSHSLASGELD-LQKLKLDSTSTSEALNRTLGEEARSINSLVVGGAPTPPPTPTAE 600

Query: 234 PNAKRQRWTHRSYPATQ 284
           P  ++Q+   +  P  Q
Sbjct: 601 PEQQQQQQQQQQQPQQQ 617


>AE014298-561|AAF45895.3|  398|Drosophila melanogaster CG32779-PA
           protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 132 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKR--QRWTHRSY-PATQP*KEHG 302
           ELLE  +  N  L      LN  +P PP TS++  NA    Q+ T ++  P   P +   
Sbjct: 147 ELLELDHRYNSGLQAELGQLNATLPPPPPTSSSAQNASNHTQQSTQQNVSPGQNPHQNQH 206

Query: 303 FM 308
           F+
Sbjct: 207 FL 208


>AE013599-1626|AAF58433.1| 1368|Drosophila melanogaster CG3905-PA
           protein.
          Length = 1368

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +3

Query: 69  LKLKAEHLIIKGFPEKIVKLN-ELLETSNFQNRNLSDVHQDLNIPI----PTPPATSNNE 233
           L  K  H +  G  + + KL  +   TS   NR L +  + +N  +    PTPP T   E
Sbjct: 542 LDFKRSHSLASGELD-LQKLKLDSTSTSEALNRTLGEEARSINSLVVGGAPTPPPTPTAE 600

Query: 234 PNAKRQRWTHRSYPATQ 284
           P  ++Q+   +  P  Q
Sbjct: 601 PEQQQQQQQQQQQPQQQ 617


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,867,313
Number of Sequences: 53049
Number of extensions: 632496
Number of successful extensions: 2281
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2280
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)