Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0124
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical ...   170   9e-43
U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z93393-19|CAC70107.3|  971|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z83229-4|CAD89896.1|  971|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    28   5.4  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    28   5.4  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    28   7.1  
U50193-7|AAL11479.1|  327|Caenorhabditis elegans T box family pr...    27   9.4  
U43375-3|AAA83620.1|  110|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   9.4  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical
           protein Y66D12A.9 protein.
          Length = 248

 Score =  170 bits (413), Expect = 9e-43
 Identities = 69/130 (53%), Positives = 107/130 (82%)
 Frame = +2

Query: 290 EGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGVS 469
           +G  ++   +G+VPCN+ L+ L+ LV+P +R+ VE  N +KMWI+ +IP+IEDGNNFGV 
Sbjct: 91  KGAPIFAFSSGTVPCNENLAQLMDLVRPKLRDAVEQCNNVKMWITLLIPRIEDGNNFGVG 150

Query: 470 IQEDTLAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLS 649
           IQE+TL+E+++  SEAA+F DQ+SRYF +R K+++K+AKYPH+DDYRRA+ ++DEK++++
Sbjct: 151 IQEETLSEVRNVESEAASFLDQMSRYFTTRGKLITKIAKYPHVDDYRRAILDMDEKQFIN 210

Query: 650 LWLVMCEIRN 679
           + LV+ E+RN
Sbjct: 211 IRLVVLEMRN 220



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
 Frame = +3

Query: 54  DYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQD--LNIPIPTP--PAT 221
           +YK  L  +AE L+ + FP+K+++ + LL++       L+++  D  LNIPIP      T
Sbjct: 15  EYKQKLFAEAERLVKEEFPKKVIEFDALLKSPKLSYDRLAEILPDKSLNIPIPDALNGTT 74

Query: 222 SNNEPNAKRQR 254
            ++EP  KRQR
Sbjct: 75  DSDEPAVKRQR 85


>U41510-8|AAK39385.1|  493|Caenorhabditis elegans Hypothetical
           protein ZC449.5 protein.
          Length = 493

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 107 PRKDSEIK*ITRDIKLSKSEFIGRTSGFKHSNTNTTCDVKQ*AKC*TSKMDSSELSSNST 286
           P+K+ +     +  K  K E        K S ++++ D K   K  +    SSE SS  T
Sbjct: 299 PKKEDKKDKKDKKDKKQKKEDSEEDDDDKKSKSSSSSDSKTDEKSTSESDSSSEASSEKT 358

Query: 287 IEGTR 301
           +EGT+
Sbjct: 359 VEGTK 363


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 156 QNRNLSDVHQDLNIPIPTPPATSNNEPN 239
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 156 QNRNLSDVHQDLNIPIPTPPATSNNEPN 239
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>Z93393-19|CAC70107.3|  971|Caenorhabditis elegans Hypothetical
           protein Y48E1B.14a protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 464 VSIQEDTLAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHIDD 604
           ++ Q D +    SGR E  A+  QIS + I R    +++A   H DD
Sbjct: 210 IAEQLDDIHVALSGRDEETAYVRQISDFLIPRLLDETRLAGRAHDDD 256


>Z83229-4|CAD89896.1|  971|Caenorhabditis elegans Hypothetical
           protein Y48E1B.14a protein.
          Length = 971

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 464 VSIQEDTLAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHIDD 604
           ++ Q D +    SGR E  A+  QIS + I R    +++A   H DD
Sbjct: 210 IAEQLDDIHVALSGRDEETAYVRQISDFLIPRLLDETRLAGRAHDDD 256


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +2

Query: 245 TSKMDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWIS 424
           T K++     +N  +E    Y+    +  C+K   DLI   K  I E      L ++ +S
Sbjct: 92  TMKIEKMLSQNNLNVEDLNSYLDAMATPKCSK---DLISQAKKWIFEYCTSDQLREIILS 148

Query: 425 FMIPKIED 448
           F++ K++D
Sbjct: 149 FLLNKVKD 156


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +2

Query: 245 TSKMDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWIS 424
           T K++     +N  +E    Y+    +  C+K   DLI   K  I E      L ++ +S
Sbjct: 92  TMKIEKMLSQNNLNVEDLNSYLDAMATPKCSK---DLISQAKKWIFEYCTSDQLREIILS 148

Query: 425 FMIPKIED 448
           F++ K++D
Sbjct: 149 FLLNKVKD 156


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 126 LNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRWTHRSYPATQP 287
           L++L E   F +   +++   L I     P+T+ N  NA ++ W  RSY +  P
Sbjct: 51  LDDLKEWKYFSDAAWNEM-TSLTIRKARSPSTTGNSGNAGKRFWAKRSYDSYAP 103


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 432 IINEIHILSKFESSTSSLMCGLTRCIRSL 346
           ++NEI +LS   +  SS+M  L +C R+L
Sbjct: 421 LVNEISLLSSDSAEMSSVMAELDKCSRTL 449


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 336 TSHSVILYILLSHTLGNLLKIQTY 407
           TSHS++L  +LS ++ NLLKI  +
Sbjct: 112 TSHSMLLLAVLSSSIRNLLKISMW 135


>U50193-7|AAL11479.1|  327|Caenorhabditis elegans T box family
           protein 7 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 162 RNLSDVHQ-DLNIPIPTPPATSNNEPNAKRQR 254
           RN+  V +  +N  I TPPA+ + EP  KR +
Sbjct: 237 RNIDTVRKRKMNQIISTPPASEDEEPEVKRTK 268


>U43375-3|AAA83620.1|  110|Caenorhabditis elegans Hypothetical
           protein K09C4.7 protein.
          Length = 110

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 474 CIETPKLFPSSIFGIINE 421
           C+ET KLFPS+++ I N+
Sbjct: 11  CLETFKLFPSTLYNIWNQ 28


>U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical
           protein D2024.2 protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 315 RMVQYPATSHSVILYILLSHTLGNLLKIQTYSK 413
           R+ ++P + H  I+  LL+HT G  L ++ + K
Sbjct: 237 RIEEFPNSGHYTIMTNLLNHTSGEYLAMEKFLK 269


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 HIRELVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLA 490
           H+ EL  +S +L  WIS +    EDG   G S+ E+ L+
Sbjct: 538 HLIELNTESEMLS-WISVLQSSSEDGIATGSSVDENELS 575


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 HIRELVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLA 490
           H+ EL  +S +L  WIS +    EDG   G S+ E+ L+
Sbjct: 416 HLIELNTESEMLS-WISVLQSSSEDGIATGSSVDENELS 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,411
Number of Sequences: 27780
Number of extensions: 334928
Number of successful extensions: 1114
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)