Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0124
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.29 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 402 FESSTSSLMCGLTRCIRSLSGLLQGTEPFGST*TRVPSMVELLDNSDESIFDV 244
           ++  T   + G TR + +  G L  TEP GS   + PSM  +   S ES  D+
Sbjct: 179 YQCRTKHRLTGETR-LSATKGRLVITEPVGSVRPKFPSMDNINGLSTESKADL 230


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 426 NEIHILSKFESSTSSLMCGLTR 361
           N +HILSK++  TS+ +  L R
Sbjct: 24  NSVHILSKYQLITSTTLNWLPR 45


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 305 KPVFLLWLSCWITPMSPS 252
           K VFL WL C +    PS
Sbjct: 333 KVVFLYWLPCILRMSRPS 350


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 108 PEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATS 224
           P+  ++L + L     Q + +SD        + TPPA+S
Sbjct: 333 PKYRLELQKRLPWLELQEKPISDSTSTTTETVNTPPASS 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,218
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)