Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0124
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...    29   3.8  
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    28   6.6  
At5g25910.1 68418.m03077 disease resistance family protein conta...    28   6.6  
At3g50750.1 68416.m05554 brassinosteroid signalling positive reg...    28   6.6  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    28   6.6  
At1g65390.2 68414.m07419 disease resistance protein (TIR class),...    28   6.6  
At1g65390.1 68414.m07420 disease resistance protein (TIR class),...    28   6.6  
At1g44780.1 68414.m05130 expressed protein ; expression supporte...    28   6.6  

>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 726

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 443 EDGNNFGVSIQEDTLAEIQSGRSEAAAFFDQISRYFISRAKIVSKVAKYPHI 598
           EDG   G  I+++ + +I  GR E++  FD+   Y   + +++   A Y H+
Sbjct: 38  EDGLT-GEKIEQELVRQIVDGR-ESSVTFDEFPYYLSEKTRLLLTSAAYVHL 87


>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 54  DYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPP 215
           D  +++ +K E + +   P + +KL  L +  NF      D+  D +IPIPTPP
Sbjct: 2   DRPETIAVKCEPMTVDS-PSRPLKLVVLADL-NFNPPETDDL--DSSIPIPTPP 51


>At5g25910.1 68418.m03077 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-5D [Lycopersicon
           esculentum] gi|3894393|gb|AAC78596;
          Length = 811

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = -3

Query: 492 SASVSSCIETPKLFPSSIFGIINEIHILSKFESSTSSLMCGLTRCIRSLSGLLQGTEPFG 313
           S ++S+   +   F   I   I E+H L   + ST+     + RCI +LS L       G
Sbjct: 417 SVTISNNTRSNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTL--EVLNLG 474

Query: 312 ST*TRVPSMVELLDNSDESIFDV*H--LAHCLTSQVVLV--LECLNPDVRPINSDF 157
                  S+ E +  S +SI D+ H  LA  L   +V +  LE LN +   IN  F
Sbjct: 475 KN-HLSGSIPENISTSVKSI-DIGHNQLAGKLPRSLVRISSLEVLNVESNKINDTF 528


>At3g50750.1 68416.m05554 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 276

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 165 NLSDVHQDLNIPIPTPPATSNNEPNAKRQRWTHRSYPATQP 287
           NL+ +    + P+ TPP +S    N +  RW   ++P + P
Sbjct: 146 NLAPLRISNSAPV-TPPISSPRRSNPRLPRWQSSNFPVSAP 185


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 578 VAKYPHIDDYRRAVRELDEKEYLSLW 655
           V  Y + DD + A+R+LD+ E+ + W
Sbjct: 163 VVDYTNYDDMKYAIRKLDDTEFRNPW 188


>At1g65390.2 68414.m07419 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 99  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 239
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 99  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 239
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


>At1g44780.1 68414.m05130 expressed protein ; expression supported
           by MPSS
          Length = 471

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 191 KHSNTNTTCDVKQ*AKC*TSKMDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVK 370
           K S  +   +VK+  K   SKM SSE +S+S  EG     + N  V   K ++  + L K
Sbjct: 206 KCSTESIVKNVKKKVKSTPSKMVSSEYNSDSDTEGN----VDNEEVAVKKTMARKVKLSK 261

Query: 371 PHI 379
           P +
Sbjct: 262 PEM 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,347
Number of Sequences: 28952
Number of extensions: 308235
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)