Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0119
         (661 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    30   3.2  
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    29   4.2  

>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent DNA
            polymerase protein.
          Length = 1000

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 160  ISNIEIEMFEKILKRFRFSHKISQKIVRKFKTNNM--KNAFXIITNK 26
            I +IE+E+ +K+L R    HK+  K    +K  ++   N   ++TNK
Sbjct: 938  IKDIELEVGDKVLLRNEVGHKLDFKYTGPYKIESIGDNNNITLLTNK 984


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 160  ISNIEIEMFEKILKRFRFSHKISQKIVRKFKTNNM--KNAFXIITNK 26
            + +IE+E+ +K+L R    HK+  K    +K  ++   N   ++TNK
Sbjct: 1175 VKDIELEVGDKVLLRNEVGHKLDFKYTGPYKIESIGDNNNITLLTNK 1221


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,194,938
Number of Sequences: 53049
Number of extensions: 403491
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)