Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0119
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20861-15|AAA62290.2|  162|Caenorhabditis elegans Hypothetical p...    30   1.3  
U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine r...    28   6.8  
AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine...    28   6.8  
AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical...    27   8.9  

>U20861-15|AAA62290.2|  162|Caenorhabditis elegans Hypothetical
           protein C28H8.2 protein.
          Length = 162

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  FKFAHYFLGDFMRESKSFQNLFEHFNF 148
           F F  YF+G F R  ++   + EHFN+
Sbjct: 42  FHFLQYFMGTFRRMFRNKTEMIEHFNY 68


>U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine
           receptor protein 22 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 370 YYVILCSLNNFLFIHVANIGFF 305
           YY+++  L +FL + V+NIG F
Sbjct: 244 YYIVVILLPSFLIVTVSNIGLF 265


>AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine
           receptor (51.1 kD)(acr-22) protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 370 YYVILCSLNNFLFIHVANIGFF 305
           YY+++  L +FL + V+NIG F
Sbjct: 244 YYIVVILLPSFLIVTVSNIGLF 265


>AL034488-14|CAE11311.1|  341|Caenorhabditis elegans Hypothetical
           protein Y54G11A.15 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 6   GTRSVIRLFVI--IXNAFFILFVLNLRTIFWEIL*ENRNLFRIFSNISISMFEIYLRSAS 179
           GTR +++ F I          FV+ L  I+W I   +    +  +NISI +F ++  S+S
Sbjct: 234 GTRKMLKNFFISMCIQVAIPTFVVQLPNIYWYISINSEFYSQELNNISIILFTLHGTSSS 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,512
Number of Sequences: 27780
Number of extensions: 240231
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)