Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0119
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    26   0.28 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.64 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    23   2.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.0  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 53  FHIVCFKFAHYFLGDFMRESKSFQNLFEHFNFN 151
           F IVC   AHY L DF       +  +++F++N
Sbjct: 12  FSIVCQAKAHYSLRDFKANIFQVKYQWKYFDYN 44


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 282 LCVTINNAKNPMFATWMNKKLFKEQR 359
           L  T+N   N M AT+MN+ L   Q+
Sbjct: 468 LMTTVNEGNNNMAATYMNECLLNIQK 493



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 12  RSVIRLFVIIXNAFFI 59
           R+VIR+ V +  AFFI
Sbjct: 281 RNVIRMLVAVVVAFFI 296


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 134 RKDSEKISILS*NLPKNSAQI*NKQYEKCVXNYNKQAYN 18
           R+ S++  I+S N P ++    N  Y     NYNK  YN
Sbjct: 73  RERSKEPKIISNNNPLSN----NYNYNNNYNNYNKHNYN 107


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 367 YVILCSLNNFLFIHVANIGFFALFIV 290
           Y + C L+   +IH   I + AL ++
Sbjct: 542 YCVACGLHRDTYIHAQQIAWMALKMI 567


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 272 YFTFRLDHQLKLTLQYDTSDSLLSQFYMAV 183
           YF  R+ + L  T ++D +  + S FY  +
Sbjct: 272 YFLERMSNDLGKTAEFDWNKPINSGFYSTI 301


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 272 YFTFRLDHQLKLTLQYDTSDSLLSQFYMAV 183
           YF  R+ + L  T ++D +  + S FY  +
Sbjct: 272 YFLERMSNDLGKTAEFDWNKPINSGFYSTI 301


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 508 FLFSYYNQVGNCRYKYFYWKYIL 440
           + +S YN   N   K +Y  YI+
Sbjct: 89  YKYSNYNNYNNYNKKLYYKNYII 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,836
Number of Sequences: 438
Number of extensions: 3341
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)