Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0114
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 139 2e-33
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 134 4e-32
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 134 8e-32
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.80
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.2
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 4.2
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.6
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 28 7.4
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 139 bits (337), Expect = 2e-33
Identities = 70/131 (53%), Positives = 84/131 (64%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V
Sbjct: 86 VMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSV 145
Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
G K +P+L T+DGRTIRYPDPL K+ L+ ++ G V
Sbjct: 146 QFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNT 205
Query: 617 GAVGTIVSRER 649
G VG I SRE+
Sbjct: 206 GRVGVIKSREK 216
Score = 113 bits (273), Expect = 9e-26
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = +3
Query: 54 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 233
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 234 LKIVKQR 254
+ I+ QR
Sbjct: 78 ISILMQR 84
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 134 bits (325), Expect = 4e-32
Identities = 66/131 (50%), Positives = 83/131 (63%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 70 VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129
Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
G K +PYL T+DGRTIRYPDPL K+ L+ ++ G V
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT 189
Query: 617 GAVGTIVSRER 649
G VG I +RE+
Sbjct: 190 GRVGVIKNREK 200
Score = 116 bits (280), Expect = 1e-26
Identities = 51/68 (75%), Positives = 59/68 (86%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 231 VLKIVKQR 254
V+ I+ QR
Sbjct: 61 VISILMQR 68
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 134 bits (323), Expect = 8e-32
Identities = 65/131 (49%), Positives = 83/131 (63%)
Frame = +2
Query: 257 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 436
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 70 VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129
Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVTW 616
G K +PYL T+DGRTIRYPDP+ K+ L+ ++ G V
Sbjct: 130 QFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNT 189
Query: 617 GAVGTIVSRER 649
G VG I +RE+
Sbjct: 190 GRVGVIKNREK 200
Score = 116 bits (280), Expect = 1e-26
Identities = 51/68 (75%), Positives = 59/68 (86%)
Frame = +3
Query: 51 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 231 VLKIVKQR 254
V+ I+ QR
Sbjct: 61 VISILMQR 68
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 195 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 94
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 208 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 80
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 167 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 54
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 344 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 448
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 255 SVVSQFSGLRFRSKHTSDDSSGKSPGASTRATCG 154
+V FSGLR S+ S S SP A++ CG
Sbjct: 4 AVGPHFSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,945,526
Number of Sequences: 37544
Number of extensions: 407804
Number of successful extensions: 1189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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