Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0114
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   160   1e-39
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   160   1e-39
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   160   1e-39
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   157   2e-38
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    29   7.2  
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    29   7.2  
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    29   7.2  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  160 bits (389), Expect = 1e-39
 Identities = 76/132 (57%), Positives = 91/132 (68%)
 Frame = +2

Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
           L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 434 VATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVT 613
              G K VP+LVTHDGRTIRYPDPL  +       +   ++        G          
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 614 WGAVGTIVSRER 649
            G VGT+V+RER
Sbjct: 189 LGRVGTVVNRER 200



 Score =  128 bits (310), Expect = 5e-30
 Identities = 60/68 (88%), Positives = 62/68 (91%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 231 VLKIVKQR 254
           V KIV QR
Sbjct: 61  VTKIVMQR 68


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  160 bits (389), Expect = 1e-39
 Identities = 76/132 (57%), Positives = 91/132 (68%)
 Frame = +2

Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
           L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 434 VATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVT 613
              G K VP+LVTHDGRTIRYPDPL  +       +   ++        G          
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 614 WGAVGTIVSRER 649
            G VGT+V+RER
Sbjct: 189 LGRVGTVVNRER 200



 Score =  128 bits (310), Expect = 5e-30
 Identities = 60/68 (88%), Positives = 62/68 (91%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 231 VLKIVKQR 254
           V KIV QR
Sbjct: 61  VTKIVMQR 68


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  160 bits (389), Expect = 1e-39
 Identities = 76/132 (57%), Positives = 91/132 (68%)
 Frame = +2

Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
           L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 434 VATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVT 613
              G K VP+LVTHDGRTIRYPDPL  +       +   ++        G          
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 614 WGAVGTIVSRER 649
            G VGT+V+RER
Sbjct: 189 LGRVGTVVNRER 200



 Score =  128 bits (310), Expect = 5e-30
 Identities = 60/68 (88%), Positives = 62/68 (91%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 231 VLKIVKQR 254
           V KIV QR
Sbjct: 61  VTKIVMQR 68


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  157 bits (380), Expect = 2e-38
 Identities = 75/132 (56%), Positives = 90/132 (68%)
 Frame = +2

Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
           L+KV GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 434 VATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVT 613
              G K VP+LVTHDGRTIRYPDPL  +       +   ++        G          
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 614 WGAVGTIVSRER 649
            G VGT+V+RER
Sbjct: 189 LGRVGTVVNRER 200



 Score =  126 bits (305), Expect = 2e-29
 Identities = 59/68 (86%), Positives = 61/68 (89%)
 Frame = +3

Query: 51  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 230
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 231 VLKIVKQR 254
           V KIV QR
Sbjct: 61  VTKIVMQR 68


>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
            protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 487  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 329
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
            isoform F protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 487  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 329
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
            isoform E protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 487  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 329
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,153,158
Number of Sequences: 53049
Number of extensions: 675510
Number of successful extensions: 1799
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)