Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0114
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   128   3e-30
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z74030-11|CAA98446.1|  481|Caenorhabditis elegans Hypothetical p...    29   2.2  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    27   8.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  128 bits (309), Expect = 3e-30
 Identities = 65/132 (49%), Positives = 80/132 (60%)
 Frame = +2

Query: 254 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 433
           +++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK 
Sbjct: 68  VVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKS 127

Query: 434 VATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGTCV*SREAVT 613
           V T  K VP L T DGRTIRYPDP  K        +  +++  S    PG          
Sbjct: 128 VRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRN 187

Query: 614 WGAVGTIVSRER 649
            G VG I  RER
Sbjct: 188 VGRVGIIGHRER 199



 Score =  105 bits (252), Expect = 3e-23
 Identities = 49/66 (74%), Positives = 53/66 (80%)
 Frame = +3

Query: 57  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 236
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 237 KIVKQR 254
           KI+ QR
Sbjct: 62  KILTQR 67


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 368 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 499
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z74030-11|CAA98446.1|  481|Caenorhabditis elegans Hypothetical
           protein D1054.13 protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 221 RKRSPENCETTLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 400
           R+R P+      +++D K      Y AGF  ++ +E   +   LI DV+   T++RI  +
Sbjct: 150 RRRRPKAKYVVWLRIDQKSSLKSIYHAGFEPII-VEPIRDRDSLITDVE---TVNRIIEQ 205

Query: 401 EAKYKLC 421
             +  LC
Sbjct: 206 RGEEILC 212


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGT 586
           +TG   VP   T    T +   P++K T+PSS T     + T +S  P T
Sbjct: 518 STGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVT 567


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 437 ATGPKNVPYLVTHDGRTIRYPDPLSKSTIPSS*TLQLRRLWTSSSLSPGT 586
           +TG   VP   T    T +   P++K T+PSS T     + T +S  P T
Sbjct: 574 STGTTTVPVPTTTGSPTTQTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVT 623


>Z81521-3|CAB04225.1|  353|Caenorhabditis elegans Hypothetical
           protein F32A11.3 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 137 ETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPE-NCETTLIKVDGKVRTD-PTYPA 301
           + V + P+VA  +    + +E S  CF RK+  E   E   I V   V T  PTY A
Sbjct: 145 QQVQQKPKVAPKMLHKMYDDEESGYCFARKKDVEQEEEVPEIHVAAPVTTPIPTYSA 201


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 486  VRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 361
            V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 880  VNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,195
Number of Sequences: 27780
Number of extensions: 333160
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)