Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0114
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.090
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 406 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 290
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 448 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 329
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 443 GPKNVPYLVTHDGRTIRYPDPLSKST 520
           G      +VTHDG  +  P  + KST
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKST 110


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 443 GPKNVPYLVTHDGRTIRYPDPLSKST 520
           G      +VTHDG  +  P  + KST
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKST 110


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 443 GPKNVPYLVTHDGRTIRYPDPLSKST 520
           G      +VTHDG  +  P  + KST
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKST 110


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 443 GPKNVPYLVTHDGRTIRYPDPLSKST 520
           G      +VTHDG  +  P  + KST
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKST 110


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 211 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 110
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 196
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,060
Number of Sequences: 438
Number of extensions: 3963
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)