Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    37   0.50 
UniRef50_Q7WN85 Cluster: Probable permease component of branched...    36   1.2  
UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2; ...    34   2.7  
UniRef50_A2FHZ9 Cluster: Beige/BEACH domain containing protein; ...    33   6.2  
UniRef50_A0H5A4 Cluster: Putative uncharacterized protein; n=1; ...    33   8.2  
UniRef50_Q6ZC68 Cluster: DNA-binding protein family-like; n=7; O...    33   8.2  
UniRef50_Q5BZE7 Cluster: SJCHGC01962 protein; n=1; Schistosoma j...    33   8.2  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 36.7 bits (81), Expect = 0.50
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +3

Query: 528 VSDGNHSPSGGPYARLPIRQ*KKSYHSLYMPIV 626
           + DGNHSPSG PYA LP R  K    SL++ ++
Sbjct: 1   MGDGNHSPSGRPYASLPTRA-KMKLTSLFIFVI 32


>UniRef50_Q7WN85 Cluster: Probable permease component of
           branched-chain amino acid transporter; n=2;
           Bordetella|Rep: Probable permease component of
           branched-chain amino acid transporter - Bordetella
           bronchiseptica (Alcaligenes bronchisepticus)
          Length = 288

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +3

Query: 438 GYTSAIVGFIVSLPS*VLGGQRLGLVPGIA 527
           G+T+A++G   SLP  VLGG  LG++ G+A
Sbjct: 222 GFTAAVIGGFASLPGAVLGGLLLGVLEGLA 251


>UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4431

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -3

Query: 234  LSTHLFLYLKCFNTNAKTYSDVDVEKNTIDIAIAKGQRNIDNN 106
            +  +LFL  K  N N K YSDV+++KN  +I   K   NI NN
Sbjct: 2954 IKRNLFLQKKRRNENKKEYSDVNIDKNNDNI---KNNDNIKNN 2993


>UniRef50_A2FHZ9 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2803

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 223  MCRKTVYRHNTRYNMYRYNKICDCLFVLKR-DVGRSRL*LLEPHQLYHNVDAAV 381
            +C +    H+T Y     NKI D L V K+ ++  S   L + + LYHN ++A+
Sbjct: 1643 VCARLTNGHSTEYRQMMLNKIVDYLLVKKKNELMESFFSLAKSYILYHNNNSAL 1696


>UniRef50_A0H5A4 Cluster: Putative uncharacterized protein; n=1;
           Chloroflexus aggregans DSM 9485|Rep: Putative
           uncharacterized protein - Chloroflexus aggregans DSM
           9485
          Length = 316

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 458 GFYCEPTQLGTWWAAAWSGPWHCCERR 538
           G  C+P   G  W+++WSG W  C  R
Sbjct: 272 GHQCDPGLAGICWSSSWSGGWCGCRSR 298


>UniRef50_Q6ZC68 Cluster: DNA-binding protein family-like; n=7;
           Oryza sativa|Rep: DNA-binding protein family-like -
           Oryza sativa subsp. japonica (Rice)
          Length = 590

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -2

Query: 496 PPST*LGRLTIKPTIADVYPSNGVKYPFNMPWDLTFQDRRQHPHYDKADEALITTAVTFL 317
           PP T + R T+    +     N VK+  N P    ++D    P++D+ +E   T  ++  
Sbjct: 442 PPQTDMYRRTVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQE 501

Query: 316 RHVLERTN 293
            H   + N
Sbjct: 502 EHTSSQPN 509


>UniRef50_Q5BZE7 Cluster: SJCHGC01962 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC01962 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 275

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 577 GRRAYGPPDGEWLPSLTAMPGTRPSRCPPS 488
           G+   G P G+ +P  +AMPGT   +C PS
Sbjct: 233 GQPTAGVPPGQSMPGASAMPGTHSIQCAPS 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,157,330
Number of Sequences: 1657284
Number of extensions: 14662596
Number of successful extensions: 34571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34544
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)