Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.9  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   5.2  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    22   5.2  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   5.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   6.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 476  TQLGTWWAAAWSGPW 520
            T+  TWW++  + PW
Sbjct: 1037 TKPSTWWSSTTTSPW 1051


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 496 GSGLVWSLALL*ATVTTHHRVGRMLVCLYGNKKKVT 603
           G GL   L  + A V  H R GR  +  YG +K  +
Sbjct: 175 GKGLGKDLQGISAPVEAHLRKGRGAIGAYGPEKSAS 210


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 403 WDLTFQDRRQHPHYDKADEAL 341
           WD  + D +Q PH  K ++ L
Sbjct: 310 WDYFWDDEQQVPHIVKGNQWL 330


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 403 WDLTFQDRRQHPHYDKADEAL 341
           WD  + D +Q PH  K ++ L
Sbjct: 311 WDYFWDDEQQVPHIVKGNQWL 331


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 403 WDLTFQDRRQHPHYDKADEAL 341
           WD  + D +Q PH  K ++ L
Sbjct: 311 WDYFWDDEQQVPHIVKGNQWL 331


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 538 VTTHHRVGRMLVCLYGNKKKVTTVSICLS 624
           V  HHR+ +++ C+Y     +T+ S+ LS
Sbjct: 22  VKKHHRLEKLVPCVY-----LTSFSVVLS 45


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 109 VIYISLSLCYGYIYCIFFYVYVTVGLGVCV 198
           V+ +   LC  Y YC F    V +   +C+
Sbjct: 137 VVPLFFLLCIYYFYCAFIIFTVHLLFLLCI 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,259
Number of Sequences: 336
Number of extensions: 3827
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)