Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47...    33   0.27 
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298...    31   0.82 
12_02_0061 - 13063434-13063525,13063679-13064566,13064912-130649...    29   2.5  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    29   2.5  
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249...    28   7.7  

>08_01_0068 +
           471729-472460,472578-472655,473270-473507,474130-474205,
           474820-474961,475326-475619,476037-476249
          Length = 590

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -2

Query: 496 PPST*LGRLTIKPTIADVYPSNGVKYPFNMPWDLTFQDRRQHPHYDKADEALITTAVTFL 317
           PP T + R T+    +     N VK+  N P    ++D    P++D+ +E   T  ++  
Sbjct: 442 PPQTDMYRRTVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQE 501

Query: 316 RHVLERTN 293
            H   + N
Sbjct: 502 EHTSSQPN 509


>06_02_0325 +
           14428065-14428799,14428916-14428993,14429607-14429844,
           14431199-14431296,14431770-14432063,14432418-14432702
          Length = 575

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -2

Query: 496 PPST*LGRLTIKPTIADVYPSNGVKYPFNMPWDLTFQDRRQHPHYDKADEALITTAVTFL 317
           PP T + R T     +     N VK+  N P    ++D    P++D+ +E   T  ++  
Sbjct: 403 PPQTDMYRRTAVADDSGTQIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDYTDLISQE 462

Query: 316 RHVLERTN 293
            H   + N
Sbjct: 463 EHTSSQPN 470


>12_02_0061 -
           13063434-13063525,13063679-13064566,13064912-13064960,
           13065059-13065330,13065422-13065797
          Length = 558

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 325 TFLRHVLERTNSHKSCYIYTYYNEY 251
           TF RHVL    S K CYI  Y+  Y
Sbjct: 43  TFDRHVLVHAKSDKPCYIKAYHGCY 67


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 528 QQCQGPDQAAAHQVPN--WVGSQ*NPLLPTYIHQME*NIPSICH 403
           Q+C+   +  A  +P   WVG+   P  P  IH ++ NI   CH
Sbjct: 132 QKCKFKWEVPAEDIPKSKWVGTAAKP--PAVIHNLDSNILDFCH 173


>02_05_0430 -
           28923784-28923830,28923931-28924341,28924552-28924963,
           28925000-28925542,28925790-28925884,28926003-28927033,
           28927304-28927452,28927483-28927523,28927594-28928206
          Length = 1113

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 325 TFLRHVLERTNSHKSCYIYTYYNEY 251
           TF RHVL      K CYI  Y+  Y
Sbjct: 529 TFDRHVLVHAKGDKPCYIKAYHGCY 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,021,136
Number of Sequences: 37544
Number of extensions: 401138
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)