Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z83123-12|CAI70411.1|  329|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z83123-11|CAB05610.3|  335|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z83123-7|CAB05612.2|  332|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    27   9.1  

>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 446 VGNSGFYCEPTQLGTWWAAAWSGPWHCCER 535
           V +SG+ C  +   T W  ++ G + CCE+
Sbjct: 41  VPSSGYECANSNSSTSWCESFDGKYKCCEK 70


>Z83123-12|CAI70411.1|  329|Caenorhabditis elegans Hypothetical
           protein T04A11.7b protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 85  PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVGLGVC 195
           P++ R I    ++ S+ + +IY IFF +++   LGVC
Sbjct: 146 PQSHREINSKILAYSIPFIHIYPIFFILHMIPALGVC 182


>Z83123-11|CAB05610.3|  335|Caenorhabditis elegans Hypothetical
           protein T04A11.7a protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 85  PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVGLGVC 195
           P++ R I    ++ S+ + +IY IFF +++   LGVC
Sbjct: 146 PQSHREINSKILAYSIPFIHIYPIFFILHMIPALGVC 182


>Z83123-7|CAB05612.2|  332|Caenorhabditis elegans Hypothetical
           protein T04A11.9 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 76  LALPKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVGLGVC 195
           + LP   R I    ++  + + +IY +FF  ++   LGVC
Sbjct: 143 IQLPHRHREINSKILAYGIPFVHIYPLFFIFFMVPALGVC 182


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 562 GPPDGEWLPSLTAMPGTRPSRC 497
           G PD  W P+L A P    S C
Sbjct: 143 GTPDWHWFPALAAAPSDADSSC 164


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 401 PWHIEGIFYSI*WIYVGNSGFYCEPTQLGTWWAAAWSG 514
           PW ++ I   I   Y G +GF  E   + TW+  A  G
Sbjct: 308 PWLLDNITRHIQDGYTGANGFRAEHAFIATWYRMAHGG 345


>AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical
           protein Y38F1A.3 protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 49  SIFNLLGI*LAL--PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTV 180
           S+ NLL   + +  P        ++IS ++ Y YIY IFF+  V V
Sbjct: 337 SLTNLLSFAIGIFTPTPAIYTFCVFISTAVIYDYIYQIFFFSAVLV 382


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 143 ISIVFFSTSTSL*VLAFVLKHFKYKNKCVERLCTVTILVIIC 268
           + +VFF TS  +    F + + KY++ C     T TIL+++C
Sbjct: 96  VFLVFFMTSDRVFASFFPIYYHKYRSHCP----TATILLLMC 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,562
Number of Sequences: 27780
Number of extensions: 351990
Number of successful extensions: 896
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)