Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.37 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.0  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 113 SIFLCPFAMAISIVFFSTSTSL*VLAFVLKHFKYKNKCVERLCTVTILVIICI 271
           S    P+A+  S +FF  +TSL V+A V     +      RLC     V+  +
Sbjct: 136 STMAIPYAVTKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIV 188


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 125 CPFAMAISIVFFSTSTSL*VLAFVLKHFKYK 217
           CPF   +  + FS++ S  +  FV+    YK
Sbjct: 198 CPFTEHLGYLIFSSTISFYLPLFVMVFTYYK 228


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
 Frame = +2

Query: 131 FAMAISIVFFSTSTSL*VLAFVLKHFKY---------KNKCVERLCTVTILVIICIDITR 283
           F++A+S +    S     + ++  HF Y         ++   E     T+L I    + R
Sbjct: 93  FSLAVSDLLLLISGLPPEIYYIWSHFPYVFGEAFCIIQSFAAETSANATVLTITAFTVER 152

Query: 284 FVTVC 298
           ++ +C
Sbjct: 153 YIAIC 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,418
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)