Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0110
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49430.1 68418.m06116 transducin family protein / WD-40 repea...    31   0.69 
At3g05380.1 68416.m00588 myb family transcription factor contain...    30   1.2  
At5g26880.1 68418.m03206 tRNA/rRNA methyltransferase (SpoU) fami...    29   3.7  
At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting...    29   3.7  
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              28   4.9  
At2g02340.1 68415.m00172 F-box family protein / SKP1 interacting...    27   8.5  

>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
            {Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
            repeat (4 copies)
          Length = 1677

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
 Frame = -2

Query: 640  KREFFTIGI*RLW*LFFYCRIGRRAYGPPDGEWLPS-LTAMPGTRPSRCPPST*LGRLTI 464
            +R  +   I R W     C++  R  G  DG W    + A+    P    P +   R T+
Sbjct: 1484 ERSRYEAAIQRNWTCRDKCKVWWRDEGEEDGSWWEGRILAVKPKSPDF--PDSPWERYTV 1541

Query: 463  KPTIADVYPSNGVKYPFNMPWDLTFQDRR-QHPHYDKADEALITTAVTFLRHVLERT 296
            K      Y S+  +   + PW+L   D + + PH D      + +A+T L    +RT
Sbjct: 1542 K------YKSDPAETHLHSPWELFDADTKWEQPHIDDEQRNRLLSALTKLETSDKRT 1592


>At3g05380.1 68416.m00588 myb family transcription factor contains
            Pfam profile:PF00249 Myb-like DNA-binding domain
          Length = 1055

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 473  PTQLGTWWAAAWSGPWHCCERR*PLTIGWAVCSSAYTAIKKKLPQSLYAYRE 628
            P++L T   A W     C ER+ P      +  +A T+++ + PQ+L  YRE
Sbjct: 986  PSELITSCVATWLMIQMCTERQYPPADVAQLIDAAVTSLQPRCPQNLPIYRE 1037


>At5g26880.1 68418.m03206 tRNA/rRNA methyltransferase (SpoU) family
           protein low similarity to tRNA (Gm18) methyltransferase
           [Thermus thermophilus] GI:11079208; contains Pfam
           profile PF00588: SpoU rRNA Methylase (RNA
           methyltransferase, TrmH) family
          Length = 263

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 486 VLGGQRLGLVPGIAVSDGNHSPSGGPYARLPI 581
           + G +  GL P  A+SD NH P GG   R+P+
Sbjct: 182 LFGSETSGLPPE-ALSDCNHEPYGGGTLRIPM 212


>At2g02320.1 68415.m00170 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 307

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 85  PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVG 183
           P+T+ ++ ++++   +CYG+ Y     V   VG
Sbjct: 184 PRTRYSVYIVFLKADICYGFAYVAMEAVVRMVG 216


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 271 RYNKICDCLFVLKRDVGRSR 330
           R+  I DC  +L+RD GRSR
Sbjct: 29  RFGDILDCQIMLERDTGRSR 48


>At2g02340.1 68415.m00172 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 305

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 85  PKTQRNIVVIYISLSLCYGYIYCIFFYVYVTVGLGVCVKTL*I*E*MCRKTVYRHNTRYN 264
           PKT+ +  ++Y  L++CYG     F  V V V +GV  + L   E  CR+ +    T   
Sbjct: 184 PKTRYSAYIVYKKLNICYG-----FENVAVEVVVGVVGQDL---EESCRRYICFDETMDE 235

Query: 265 MYR 273
            +R
Sbjct: 236 QFR 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,451
Number of Sequences: 28952
Number of extensions: 319114
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)