Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0109
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   125   5e-30
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   3.1  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.2  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  125 bits (302), Expect = 5e-30
 Identities = 55/79 (69%), Positives = 67/79 (84%)
 Frame = +1

Query: 274 QLPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 453
           Q+PLF  A+ IT+  LLL+LPVLAG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFG
Sbjct: 187 QMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFG 246

Query: 454 HPEVYILILPGFGIISHII 510
           HPEVYILI+P FG++SHII
Sbjct: 247 HPEVYILIMPAFGVVSHII 265



 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 28/65 (43%), Positives = 34/65 (52%)
 Frame = +2

Query: 14  AFXRIXYIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 193
           A+ R+    F              + E G G G TVYPPLSS  +H G ++DLAI SL L
Sbjct: 100 AYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQL 159

Query: 194 AGISS 208
            GISS
Sbjct: 160 TGISS 164



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 603 HHIFTGGIDIDTRAYFT 653
           HH+FT G+D+DTRAYF+
Sbjct: 296 HHLFTVGLDVDTRAYFS 312


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -2

Query: 283 RVIDQMIYY--LSYINYCCNKINCSY 212
           R++D + YY  LS I  CCN++NC++
Sbjct: 37  RLLDFLEYYPGLSEIG-CCNELNCAF 61


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 46  TPTPLPYIINFKKNCRKWCRNRMNS 120
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,725
Number of Sequences: 5004
Number of extensions: 38897
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)