Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0108
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 146 3e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 82 8e-17
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 79 7e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 3e-06
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 33 0.049
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 31 0.15
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.26
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.79
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.2
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 4.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 146 bits (353), Expect = 3e-36
Identities = 104/225 (46%), Positives = 114/225 (50%), Gaps = 9/225 (4%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PA YVAIQA LSL+ASGRTTGIVLDSGDGV+HTVP YEGYALPHAI YL
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 189
Query: 183 MKILTERGYXFTTTAEREXVRDIKRSXATSXLTXSRRWPPLHXAAXXRSLTNXPTVRSSP 362
MKIL ERGY F+TTAERE VRDIK L + L AA SL +
Sbjct: 190 MKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQE---LQTAAQSSSLEKSYELPDGQ 246
Query: 363 XETKDSVARGSLPTLDLGYGSXAXXTRQXIXPX*SATWTSVRTCTPTPYXRWYHHV---- 530
T + R P L S I AT+ S+ C Y +V
Sbjct: 247 VITIGN-ERFRAPEA-LFQPSALGLENAGIH---EATYNSIMKCDVDIRKDLYGNVVMSG 301
Query: 531 -----PWNRXPYAKGNTALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
P K ALAPS+MK KI P RKYSVWI GSIL
Sbjct: 302 GTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSIL 346
Score = 96.3 bits (229), Expect = 3e-21
Identities = 49/86 (56%), Positives = 53/86 (61%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV LD QE+ T LEKSYEL GQVIT GNERFR P + +
Sbjct: 213 KEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENA 272
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HE TY S MKCDVDIRKDLY N V
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVV 298
Score = 47.6 bits (108), Expect = 2e-06
Identities = 33/67 (49%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +1
Query: 385 PEALFQPSILGME--AXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQK 558
PEALFQPS LG+E N + +V L M GGTTMYPGI RMQK
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRKD--LYGNVVMSGGTTMYPGIADRMQK 315
Query: 559 EIQ-LSP 576
EIQ L+P
Sbjct: 316 EIQALAP 322
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 81.8 bits (193), Expect = 8e-17
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +3
Query: 9 MYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYLMK 188
+YVAIQA LSL+A G ++G+V+DSGDGV+H VP YE L H + YL+
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLIS 191
Query: 189 ILTERGYXFTTTAEREXVRDIK 254
+L +GY F TA+ E VR++K
Sbjct: 192 LLLRKGYAFNRTADFETVREMK 213
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV D + L ++Y L G+VI G+ER+ C P +
Sbjct: 213 KEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQP 272
Query: 431 GXHETTYXSXMKCDVDIRKDLY 496
G E + + DVDIRK LY
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLY 294
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PE LFQP ++G E L R + GG++MY G+ R++KEI
Sbjct: 258 PECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEI 317
Query: 565 Q 567
+
Sbjct: 318 K 318
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 78.6 bits (185), Expect = 7e-16
Identities = 36/84 (42%), Positives = 55/84 (65%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PA+ ++Q L+L+AS RTTGIVL+ GDG++H+VP Y+G+++P AI YL
Sbjct: 135 PALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Query: 183 MKILTERGYXFTTTAEREXVRDIK 254
L + G+ ++AE+E VR+IK
Sbjct: 195 QLQLRKSGHELVSSAEKEIVREIK 218
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EK YV D E+ + +Y+L Q IT G E F + NP +
Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G H + S + D+D+R LY+N V
Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIV 303
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Frame = +3
Query: 9 MYVAIQAXLSLFASGRT--------TGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXX 164
+Y+A+QA L+L AS + TG V+DSGDGV+H +P EGY + +I
Sbjct: 155 LYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGR 214
Query: 165 XXXXYLMKILTERGYXFTTTAEREXVRD 248
++ +L +R ++ E +++
Sbjct: 215 DVTYFVQSLLRDRNEPDSSLKTAERIKE 242
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 32.7 bits (71), Expect = 0.049
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYAL 128
PA Y+A Q + FASG+ T ++D G S Y+G+ L
Sbjct: 128 PATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 31.1 bits (67), Expect = 0.15
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Frame = +2
Query: 326 KSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX---------GXHETTYXSXMKCDVD 478
K +E G G ERFR + NP + G HE Y S + CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 479 IRKDLYANTV 508
+R L N V
Sbjct: 339 LRSPLLNNIV 348
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 514 GGTTMYPGIDXRMQKEIQ 567
GGT++ PG+ R+Q E+Q
Sbjct: 351 GGTSLIPGLSERLQAEVQ 368
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXP 159
P T+P P S P VP S P+ P P P + P PS P
Sbjct: 1037 PSTAPPVPIPT-STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTP-----ATVSPTPCPXTRDTHSPTPS 141
PP +P P P VPP S P A + P P P + P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.2 bits (55), Expect = 4.2
Identities = 22/78 (28%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRP--VVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPVAXXXX 177
PP PS +P VPPV P+ P P P P PS PV
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS--GAPPVPKPSV 1147
Query: 178 XXXXXXXXAGTXSLPPPS 231
+G +P PS
Sbjct: 1148 AAPPVPAPSGAPPVPKPS 1165
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPV--VPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXP 159
PP +PS +P VPPV P+ P P P P PS P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSP-TPCPXTRDTHSPTPS 141
PP T+P P P VP + P +P + P S PS
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPS 1258
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.79
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 358 HHXKRKIPLPEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPG 537
H +I +PE +F PSI+G++ + LV + GG PG
Sbjct: 590 HLNVEQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPG 649
Query: 538 IDXRMQKEI 564
++ R+++E+
Sbjct: 650 METRIKREL 658
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGR--TTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXX 176
P++ I S + + + ++GIVL+ G+ SH +P G +
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSS 204
Query: 177 YLMKI 191
YL+K+
Sbjct: 205 YLLKL 209
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 10 CTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPVA 165
C +PS+ C + PV + T S TP P T + +PTP+ T A
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTSTTTTA 873
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 40 CSRP-VVPPVSCWTPATVSPTPCPXTRDTHSP 132
C R + PPV+C TP P C + H P
Sbjct: 624 CGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTP----ATVSPTPCPXTRDTHSPTPSCVXTXPVA 165
PP PS P + P +PP + P + P P P P+ PVA
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVA 489
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXP 159
PP P+ P S P +PP+ + + P P P + +P PS + P
Sbjct: 388 PPAPPPAIPGR--SAPALPPLGNASRTSTPPVPTPPSLPPSAP-PSLPPSAP 436
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 10 CTSPSKPFSRCSRPVVPPVSCWTPA 84
C+S KPF+ R +PP+S +PA
Sbjct: 562 CSSTPKPFNSKLRAHLPPLSIGSPA 586
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Frame = +1
Query: 22 SKPFSRCSRPVVPPVSCWT---PATVSPTPCPXTRDTHSPTPSCVXTXPV 162
S+ S + P PP + T PA SP P H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPT-PSCVXTXP 159
P SPS P S +P ++P + S +P T ++SPT PS T P
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSP 1604
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.7
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHS---PTPSCVXTXPVAXXXX 177
P T S S P VPP S + + P + DT+S PT S T +
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPT 181
Query: 178 XXXXXXXXAGTXSLPPPS 231
T ++PP S
Sbjct: 182 GGSSSLSTPITPTVPPTS 199
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVS-CWTPATVSPTPCPXTRDTHSPTPS 141
P T S S P VPP S T + PT T SP P+
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,438
Number of Sequences: 5004
Number of extensions: 40249
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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