Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0108
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 5e-32
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 133 1e-31
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 133 1e-31
SB_56| Best HMM Match : Actin (HMM E-Value=0) 133 1e-31
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 133 1e-31
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 128 4e-30
SB_54| Best HMM Match : Actin (HMM E-Value=0) 107 1e-23
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 95 3e-20
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 3e-17
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 76 2e-14
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 47 1e-05
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 45 6e-05
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 44 1e-04
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 33 0.21
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 32 0.36
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 32 0.48
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 0.63
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 31 0.84
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 31 0.84
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6) 30 1.5
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2) 29 2.6
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 29 3.4
SB_57060| Best HMM Match : W2 (HMM E-Value=2.5) 29 4.5
SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 28 5.9
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22) 28 7.8
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 134 bits (325), Expect = 5e-32
Identities = 66/88 (75%), Positives = 69/88 (78%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PAMYVAIQA LSL+ASGRTTGIV+DSGDGV+HTVP YEGYALPHAI YL
Sbjct: 130 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 189
Query: 183 MKILTERGYXFTTTAEREXVRDIKRSXA 266
MKILTERGY FTTTAERE VRDIK A
Sbjct: 190 MKILTERGYSFTTTAEREIVRDIKEKLA 217
Score = 108 bits (260), Expect = 3e-24
Identities = 55/86 (63%), Positives = 57/86 (66%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV LD QEMAT LEKSYEL GQVIT GNERFRC P +
Sbjct: 213 KEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESA 272
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HETTY S MKCDVDIRKDLYANTV
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYANTV 298
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 564 TALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
+ALAP TMK KI P RKYSVWI GSIL
Sbjct: 318 SALAPPTMKIKIIAPPERKYSVWIGGSIL 346
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PEA+FQPS LGME+ + L + GG+TM+PGI RMQKEI
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 317
Query: 565 Q-LSP 576
L+P
Sbjct: 318 SALAP 322
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 133 bits (322), Expect = 1e-31
Identities = 65/84 (77%), Positives = 68/84 (80%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PAMYVAIQA LSL+ASGRTTGIV+DSGDGV+HTVP YEGYALPHAI YL
Sbjct: 93 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYL 152
Query: 183 MKILTERGYXFTTTAEREXVRDIK 254
MKILTERGY FTTTAERE VRDIK
Sbjct: 153 MKILTERGYSFTTTAEREIVRDIK 176
Score = 106 bits (255), Expect = 1e-23
Identities = 54/86 (62%), Positives = 56/86 (65%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV LD QEM T LEKSYEL GQVIT GNERFRC P +
Sbjct: 176 KEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESA 235
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HETTY S MKCDVDIRKDLYANTV
Sbjct: 236 GIHETTYNSIMKCDVDIRKDLYANTV 261
Score = 47.2 bits (107), Expect = 1e-05
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PEA+FQPS LGME+ + L + GGTTMYPGI RMQKEI
Sbjct: 221 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 280
Query: 565 Q-LSP 576
L+P
Sbjct: 281 SALAP 285
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 564 TALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
+ALAP TMK KI P RKYSVWI GSIL
Sbjct: 281 SALAPPTMKIKIIAPPERKYSVWIGGSIL 309
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 133 bits (322), Expect = 1e-31
Identities = 65/84 (77%), Positives = 68/84 (80%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PAMYVAIQA LSL+ASGRTTGIV+DSGDGV+HTVP YEGYALPHAI YL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYL 190
Query: 183 MKILTERGYXFTTTAEREXVRDIK 254
MKILTERGY FTTTAERE VRDIK
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIK 214
Score = 106 bits (255), Expect = 1e-23
Identities = 54/86 (62%), Positives = 56/86 (65%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV LD QEM T LEKSYEL GQVIT GNERFRC P +
Sbjct: 214 KEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESA 273
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HETTY S MKCDVDIRKDLYANTV
Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYANTV 299
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PEA+FQPS LGME+ + L + GG+TMYPGI RMQKEI
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 318
Query: 565 -QLSP 576
L+P
Sbjct: 319 TSLAP 323
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 564 TALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
T+LAP TMK KI P RKYSVWI GSIL
Sbjct: 319 TSLAPPTMKIKIIAPPERKYSVWIGGSIL 347
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 133 bits (322), Expect = 1e-31
Identities = 65/84 (77%), Positives = 68/84 (80%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PAMYVAIQA LSL+ASGRTTGIV+DSGDGV+HTVP YEGYALPHAI YL
Sbjct: 130 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 189
Query: 183 MKILTERGYXFTTTAEREXVRDIK 254
MKILTERGY FTTTAERE VRDIK
Sbjct: 190 MKILTERGYSFTTTAEREIVRDIK 213
Score = 106 bits (255), Expect = 1e-23
Identities = 54/86 (62%), Positives = 56/86 (65%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV LD QEM T LEKSYEL GQVIT GNERFRC P +
Sbjct: 213 KEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESA 272
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HETTY S MKCDVDIRKDLYANTV
Sbjct: 273 GIHETTYNSIMKCDVDIRKDLYANTV 298
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PEA+FQPS LGME+ + L + GG+TMYPGI RMQKEI
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 317
Query: 565 -QLSP 576
L+P
Sbjct: 318 TSLAP 322
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 564 TALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
T+LAP TMK KI P RKYSVWI GSIL
Sbjct: 318 TSLAPPTMKIKIIAPPERKYSVWIGGSIL 346
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 133 bits (322), Expect = 1e-31
Identities = 65/84 (77%), Positives = 68/84 (80%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PAMYVAIQA LSL+ASGRTTGIV+DSGDGV+HTVP YEGYALPHAI YL
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYL 190
Query: 183 MKILTERGYXFTTTAEREXVRDIK 254
MKILTERGY FTTTAERE VRDIK
Sbjct: 191 MKILTERGYSFTTTAEREIVRDIK 214
Score = 107 bits (256), Expect = 1e-23
Identities = 54/86 (62%), Positives = 56/86 (65%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV LD QEM T LEKSYEL GQVIT GNERFRC P +
Sbjct: 214 KEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESA 273
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HETTY S MKCDVDIRKDLYANTV
Sbjct: 274 GIHETTYNSIMKCDVDIRKDLYANTV 299
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PEA+FQPS LGME+ + L + GG+TMYPGI RMQKEI
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 318
Query: 565 Q-LSP 576
L+P
Sbjct: 319 SALAP 323
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 564 TALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
+ALAP TMK KI P RKYSVWI GSIL
Sbjct: 319 SALAPPTMKIKIIAPPERKYSVWIGGSIL 347
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 128 bits (309), Expect = 4e-30
Identities = 61/84 (72%), Positives = 66/84 (78%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PA+YVAIQA LSL+ASGRTTG+V DSGDGVSH VP YEGYALPHAI YL
Sbjct: 9 PAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYL 68
Query: 183 MKILTERGYXFTTTAEREXVRDIK 254
MK++TERGY FTTTAERE VRDIK
Sbjct: 69 MKLMTERGYSFTTTAEREIVRDIK 92
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 107 bits (256), Expect = 1e-23
Identities = 47/86 (54%), Positives = 61/86 (70%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
P MYVA+QA ++L+ASGRTTG V D GDGVSHTVP Y+GY LPHA YL
Sbjct: 2175 PCMYVAVQAVMALYASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYL 2234
Query: 183 MKILTERGYXFTTTAEREXVRDIKRS 260
+++TERGY F +TAE++ +RD+K +
Sbjct: 2235 QRLVTERGYSFQSTAEQQIIRDLKET 2260
Score = 55.6 bits (128), Expect = 3e-08
Identities = 29/86 (33%), Positives = 41/86 (47%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+E L Y +D +E+ E Y L GQ I G+ERFR P +
Sbjct: 2258 KETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDID 2317
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HE+ + S KCD+D+R +L+ N V
Sbjct: 2318 GIHESIFKSIKKCDIDLRAELFHNIV 2343
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 105 bits (252), Expect = 3e-23
Identities = 53/86 (61%), Positives = 56/86 (65%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV LD QEM T +EKSYEL GQVIT GNERFRC P +
Sbjct: 187 KEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESS 246
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G HETTY S MKCDVDIRKDLYANTV
Sbjct: 247 GIHETTYNSIMKCDVDIRKDLYANTV 272
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/43 (83%), Positives = 39/43 (90%), Gaps = 2/43 (4%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYE--GYA 125
PAMYVAIQA LSL+ASGRTTGIV+DSGDGVSHTVP YE GY+
Sbjct: 131 PAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = +3
Query: 564 TALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
+ALAPSTMK KI P RKYSVWI GSIL
Sbjct: 292 SALAPSTMKIKIIAPPERKYSVWIGGSIL 320
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/65 (44%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PEAL QPS LGME+ + L M GGTTMYPG+ RMQKEI
Sbjct: 232 PEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEI 291
Query: 565 Q-LSP 576
L+P
Sbjct: 292 SALAP 296
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 95.5 bits (227), Expect = 3e-20
Identities = 43/90 (47%), Positives = 62/90 (68%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYL 182
PA+++++QA LSL+A+GRTTG+VLD+GDGVSH+VP YEG+A+PH+I YL
Sbjct: 156 PALFISMQAVLSLYATGRTTGVVLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYL 215
Query: 183 MKILTERGYXFTTTAEREXVRDIKRSXATS 272
+L + G+ F +++E E VR IK S
Sbjct: 216 RLLLRKEGHCFHSSSELEIVRTIKEESMES 245
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 85.8 bits (203), Expect = 3e-17
Identities = 40/82 (48%), Positives = 53/82 (64%)
Frame = +3
Query: 9 MYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYLMK 188
+Y+AIQA L+L+A G TG+V+DSGDGV+H P YEG+ALPH YL+K
Sbjct: 136 VYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIK 195
Query: 189 ILTERGYXFTTTAEREXVRDIK 254
++ RGY F TA+ E VR +K
Sbjct: 196 LMLLRGYAFNHTADFETVRMMK 217
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLX 430
+EKL YV + QE L + Y L G+V+ ERF P +
Sbjct: 217 KEKLCYVGYNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGV 276
Query: 431 GXHETTYXSXMKCDVDIRKDLYANTV 508
G E + + D+D R + Y + V
Sbjct: 277 GVAELLFNTIQAADIDTRSEFYKHIV 302
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
PEALFQP ++ +E + + GG+TMYPG+ R+++EI
Sbjct: 262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREI 321
Query: 565 Q 567
+
Sbjct: 322 K 322
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/63 (57%), Positives = 40/63 (63%)
Frame = +2
Query: 320 LEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLXGXHETTYXSXMKCDVDIRKDLYA 499
LEK+YEL GQVI+ GNERFRC P + G HE Y MKCDVDIRKDLY+
Sbjct: 10 LEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYS 69
Query: 500 NTV 508
N V
Sbjct: 70 NCV 72
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 385 PEALFQPSILGMEAXRXXRD--NXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQK 558
PEA+FQP+ LGMEA N + +V L + GG+TM+PGI RMQK
Sbjct: 32 PEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKD--LYSNCVLSGGSTMFPGIADRMQK 89
Query: 559 EIQL 570
EI +
Sbjct: 90 EIAM 93
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +3
Query: 570 LAPSTMKXKIXXPTXRKYSVWIXGSIL 650
LA ++MK K+ P RKYSVWI GSIL
Sbjct: 94 LANASMKVKVIAPPERKYSVWIGGSIL 120
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 QAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYLMKIL-TE 200
Q LSL+ASG T G+ L SG + YEG+ L H + L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 201 RGYXFTTTAEREXVRDIK 254
RG+ FT+++ + V DIK
Sbjct: 827 RGHNFTSSSGWQIVNDIK 844
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 251 QEKLXYVXLDXXQEMATXXXXXXLEKSYELXXGQVITXGNE 373
+EK+ Y+ D +E+ L K Y L GQ+I+ G E
Sbjct: 844 KEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYE 884
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 3 PAMYVAIQAXLSLFASGRTTGIVLDSGDGVSHTVPXYEGYALPHAI 140
PA ++ + L+ FA+GR+ G+V+DSG + VP ++GY L AI
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAI 108
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 60 TGIVLDSGDGVSHTVPXYEGYALPHAIXXXXXXXXXXXXYLMKILTERGYXFTTTAEREX 239
TG V+DSGDGV+H +P EGY + I ++ ++L ER E
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLREREMGIPPEQSMET 121
Query: 240 VRDIK 254
+ IK
Sbjct: 122 AKTIK 126
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 34.7 bits (76), Expect = 0.068
Identities = 21/76 (27%), Positives = 26/76 (34%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPVAXXXXXX 183
PP P P + +RP VP +T PTP P T P P+ P
Sbjct: 919 PPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPPPTSALPPPIPATQVPPPPLPPLPPP 978
Query: 184 XXXXXXAGTXSLPPPS 231
+LPP S
Sbjct: 979 PPPVQTTTAPTLPPAS 994
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPVA 165
P SP+ P P P + TP T +PT T+ T + TP+ P A
Sbjct: 56 PTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTTSTLTKPTPATTPTPTKPTPTA 109
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 4 PPCTSPSK--PFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPVAXXXX 177
P T+P++ P P P + TPAT PTP T T +PT S + T P
Sbjct: 44 PTSTAPTQTTPTPTTPSPTAPTQTTPTPAT--PTPTTPTPKTPTPTTSTL-TKPTPATTP 100
Query: 178 XXXXXXXXAGTXSLPPPS 231
A T + P P+
Sbjct: 101 TPTKPTPTAHTPTTPTPT 118
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSPT-PCPXTRDTHSPTPS 141
P +P+KP P + TP T SPT P T +PTP+
Sbjct: 31 PTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPT 77
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +1
Query: 16 SPSKPFSRCSRPVVPPVSCWTPATVSP---TPCPXTRDTHSPT 135
+P+KP P P + TP +P TP T H+PT
Sbjct: 101 TPTKPTPTAHTPTTPTPTAHTPTKPTPKTPTPTTPTPTAHTPT 143
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSPT 99
P +P+KP + P P + TP T +PT
Sbjct: 117 PTAHTPTKPTPKTPTPTTPTPTAHTPTTPTPT 148
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRP-VVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPVAXXXXX 180
PP T P+ P S + P VP + P V+P P + PTP V P +
Sbjct: 332 PPVTEPAPPSSVVAPPPAVPTPATAPPPVVAPPPSVFASSSGVPTP--VKAPPPSVFASS 389
Query: 181 XXXXXXXAGTXSLPPPS 231
A PPPS
Sbjct: 390 SGVPTPVAAPPPAPPPS 406
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/86 (27%), Positives = 33/86 (38%)
Frame = +1
Query: 49 PVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPVAXXXXXXXXXXXXAGTXSLPPP 228
P PP S + P+ S P P T +P PS P + A T S PPP
Sbjct: 538 PPAPPPSVFAPS--SGVPTPVTAPPPAPPPSVF--APSSAVPTPATAPPPVAATLSAPPP 593
Query: 229 SGKXCVTSREAXLRRS*LXAGDGHRC 306
TS + + + + G +RC
Sbjct: 594 LDS---TSGSSTISSATICFGPTNRC 616
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 7 PCTSPSKP-FSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXP 159
P SPS P F RP PP+ P + TP P + T P P+ V P
Sbjct: 587 PSYSPSSPSFHHNLRPTPPPLPLSIPLLLQATP-PHLQSTAQPRPTTVPPLP 637
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 13 TSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXP 159
T+P+ P + + P P + TP T + TP +P P+ P
Sbjct: 130 TTPTTPTTAPTTPTTPTTAATTPTTAATTPAAGAAAAAAPPPAAAAAAP 178
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 25 KPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSC 144
K F C R VPPVS +P PC P +C
Sbjct: 637 KAFGECGRTTVPPVSTSSPTPTPQDPCTGFNCDTPPYSTC 676
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 60 TGIVLDSGDGVSHTVP 107
TG V+DSGDGV+H +P
Sbjct: 356 TGCVIDSGDGVTHVIP 371
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPC 105
PC SPS P S S + P C+T T+SP PC
Sbjct: 510 PCFSPSNP-SPASH--LSPKPCFTSLTLSPKPC 539
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPC 105
P T PS P C + P C+T T+SP PC
Sbjct: 671 PATHPS-PSQPCPATHLSPKPCFTFVTLSPKPC 702
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 4 PPCTSP-SKPFSRCSRPVVPPVSCWTPATVSPT-PCPXTRDTHSPTPS 141
P TSP + P +R P+ PP C + V PT P ++ + SP+PS
Sbjct: 316 PAFTSPPNTPTTRTFSPISPPAGC-AASPVPPTPPAISSKRSFSPSPS 362
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 40 CSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXT 153
CSRP PPV+ T +T S T T T + TP+ T
Sbjct: 620 CSRPTTPPVTT-TKSTTSSTTKGTTASTTTSTPTTTPT 656
>SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6)
Length = 187
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 19 PSKPFSRCSRPV--VPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXPV 162
PS P S PV V T T +PT C T + P+C+ PV
Sbjct: 85 PSSPVSPLPSPVPAVAATPSQTYCTSTPTSCTPTTTCYLQVPTCILIPPV 134
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSPT--PCPXTRDTHSPTPS 141
P P++PF ++P PP TP++ PT P T ++ PTPS
Sbjct: 170 PSYPPTQPFYPPTQPFYPP----TPSSYPPTQPSYPPTAPSYPPTPS 212
>SB_11585| Best HMM Match : TPR_MLP1_2 (HMM E-Value=2.2)
Length = 610
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 16 SPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXT 153
+PS+ S + PV S + T++ P P + DT SPTP T
Sbjct: 306 TPSRLVSLQNSPVKMMRSTLSAQTLAENPIPESTDTTSPTPPLTDT 351
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 19 PSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPSCVXTXP 159
P+ P P P V P V P+P + SPTPSC+ P
Sbjct: 195 PNSPPQVVDIPETPAVVPPIPTLVVPSPLTQP-EVESPTPSCIEQQP 240
>SB_57060| Best HMM Match : W2 (HMM E-Value=2.5)
Length = 152
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSP 96
PP +SPS PF+R S+ +P TP T P
Sbjct: 100 PPSSSPSTPFAR-SKLALPTPPYSTPRTTKP 129
>SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSP 96
PP +SPS PF+R S+ +P TP T P
Sbjct: 100 PPSSSPSTPFAR-SKLALPTPPYSTPRTTGP 129
>SB_39482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSP 96
PP +SPS PF+R S+ +P TP T P
Sbjct: 100 PPSSSPSTPFAR-SKLALPTPPYSTPRTTKP 129
>SB_48974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPV-VPPVSCWTPATVSP 96
PP +SPS PF+R + PP S TP T P
Sbjct: 100 PPSSSPSTPFARSELALPTPPYS--TPRTTKP 129
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 1 RPPCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHS 129
+PP T+PSK + P+ P++ TP T T T+ T S
Sbjct: 383 KPPTTTPSK----ATAPISDPMTTTTPTTTKATTPTTTKATAS 421
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/82 (31%), Positives = 35/82 (42%)
Frame = +2
Query: 14 RRHPSXSLAVRVRSYHRYRAGLRRRCLPHRAHXRGIRTPPRHPASGLXRSRPHRLPXEDP 193
RR S + R RS R R+ RRR R R+P H S RSR R P
Sbjct: 211 RRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSR-SRSPRRRH 269
Query: 194 HRARVLXHYHRRAGNXA*HQEK 259
R+R H R+ + + ++K
Sbjct: 270 SRSRSPTHRRHRSRSHSPEKKK 291
>SB_2270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 4 PPCTSPSKPFSRCSRPVVPPVSCWTPATVSP 96
PP +SPS PF+R S+ +P TP T P
Sbjct: 100 PPSSSPSTPFAR-SKLALPTPPYSTPRTTRP 129
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 31 FSRCSRPVVPPVSCWTPATVSPTPC-----PXTRDTHSP 132
++ C++ +P +TP T TPC P T +H+P
Sbjct: 856 YTPCTKRYIPSAKRYTPCTERYTPCTKRYTPSTEPSHAP 894
>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
Length = 1197
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSP----TPCPXTRDTHSPTP 138
P T +P S + P +PP P ++ P P P DT P P
Sbjct: 843 PTTKTDRPLSPSAPPPLPPRPVGAPPSLPPRPRTRPLPPKSDTPPPPP 890
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +1
Query: 7 PCTSPSKPFSRCSRPVVPPVSCWTPATVSPTPCPXTRDTHSPTPS 141
P P KP S P PP P+T P P P D P+
Sbjct: 1055 PIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPA 1099
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,294,415
Number of Sequences: 59808
Number of extensions: 379265
Number of successful extensions: 1366
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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