Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0108
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              94   1e-21
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 93.9 bits (223), Expect = 1e-21
 Identities = 47/73 (64%), Positives = 48/73 (65%)
 Frame = +2

Query: 290 EMATXXXXXXLEKSYELXXGQVITXGNERFRCQRLSSNPRSWVWKLXGXHETTYXSXMKC 469
           EMAT      LEKSYEL  GQVIT GNERFRC      P     +  G HETTY S MKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 470 DVDIRKDLYANTV 508
           DVDIRKDLYANTV
Sbjct: 61  DVDIRKDLYANTV 73



 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 29/60 (48%), Positives = 31/60 (51%)
 Frame = +1

Query: 385 PEALFQPSILGMEAXRXXRDNXXLHXEVRRGHP*GLVRQHRMXGGTTMYPGIDXRMQKEI 564
           PEALFQPS LGMEA            +        L     + GGTTMYPGI  RMQKEI
Sbjct: 33  PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 92



 Score = 47.6 bits (108), Expect = 1e-07
 Identities = 22/29 (75%), Positives = 23/29 (79%)
 Frame = +3

Query: 564 TALAPSTMKXKIXXPTXRKYSVWIXGSIL 650
           TALAPSTMK KI  P  +KYSVWI GSIL
Sbjct: 93  TALAPSTMKIKIIAPPEKKYSVWIGGSIL 121


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 445 NXXLHXEVRRGHP*GLVRQHRMXGGTTMYPG 537
           N  L+ +V+ GH    V+QHR    +T   G
Sbjct: 264 NRQLNSDVQPGHGSPPVKQHRSSSASTTCSG 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,930
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)