Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0106
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 65 7e-12
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 31 0.11
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 30 0.25
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 30 0.33
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.76
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.1
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 5.3
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 9.3
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 65.3 bits (152), Expect = 7e-12
Identities = 34/74 (45%), Positives = 43/74 (58%)
Frame = +2
Query: 38 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 217
F RYVE GRV LV G GKL +VD++D RAL+D P S PRQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 218 KYAFTAPTRLVRKR 259
K A + +V K+
Sbjct: 64 KLPRGARSGIVAKK 77
Score = 46.0 bits (104), Expect = 5e-06
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 259 WTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSLK 423
W + KW S WA+KL K+ R+Q+ D+DRF + + +R + AV K+LK
Sbjct: 78 WKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 31.5 bits (68), Expect = 0.11
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 226 VHSPYSSCEEAWTDAKLNEKWTESQWA 306
VH PY+S E+A+ D +N+K E W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 351 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRFLTRRVGAVN 226
V+C CAL +R P+ FCP ++F+ P+FL G V+
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKFLCCLQGFVS 547
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 44 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 130
+ ++PG+VAL+ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 44 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 130
+ ++PG+VALV G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLN 279
KP P+ ++ PQ ++SP S E + KL+
Sbjct: 377 KPKPAKELSPQATLNSPIQSAEAGNVELKLH 407
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 250 EEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTA 405
E A + + E+ E++ +KLA +EKR + + K R+++ RA+ A
Sbjct: 707 ERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA 758
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 56 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 181
PG V ++ G +GK V V+ ++ T +V GP +GVP +++
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 441 STLSLXLQALEYGSPGTVPLNSCSC*LEPIVICHLCAL 328
STLS+ L L+Y +P + S SC C L AL
Sbjct: 122 STLSIVLTILKYLAPAYIRQWSISCLTTSTAACLLLAL 159
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 141 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 242
++ D AV Y N+ NS++ ++A N S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,332
Number of Sequences: 5004
Number of extensions: 42466
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -