Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0106
(646 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 60 1e-09
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 31 0.53
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 31 0.53
Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81096-5|CAD54150.1| 507|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical p... 29 2.1
Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical p... 29 2.1
Z78065-8|CAD54156.1| 507|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 29 3.7
Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical pr... 29 3.7
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 29 3.7
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 29 3.7
U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical pr... 28 6.5
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/86 (40%), Positives = 45/86 (52%)
Frame = +2
Query: 38 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 217
F R V+ GRV +A G +GKL ++V+VID R +DGP S V R L L LTKF L
Sbjct: 3 FNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKFVL 62
Query: 218 KYAFTAPTRLVRKRGQMLNSMKNGQK 295
K T+ V+ +N QK
Sbjct: 63 KLRVGQRTKGVKAAFDAAKVTENFQK 88
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = +1
Query: 184 LKPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK 363
LK K ++RV + A+ AK+ E + ++QWA+K+A + RA++TD++R+K
Sbjct: 52 LKDLQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYK 111
Query: 364 LTAARVKRNRARTAVFKSLKXKAER 438
L A+ RNR LK KA++
Sbjct: 112 LMKAKQMRNRIVRVELAKLK-KAQK 135
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 268 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKXKAERAGT 447
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K ++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 448 FGKKNIP 468
KK+ P
Sbjct: 186 -AKKSAP 191
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +1
Query: 268 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKXKAERAGT 447
A EK + AQK A EK+A+ T + K TA +VK+ ++ + K K ++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 448 FGKKNIP 468
KK+ P
Sbjct: 186 -AKKSAP 191
>Z81096-8|CAD54149.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 535 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 594
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 595 YQRIERLNEEYDGKIKNLMYDSERA 619
>Z81096-6|CAJ80827.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 304 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 363
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 364 YQRIERLNEEYDGKIKNLMYDSERA 388
>Z81096-5|CAD54150.1| 507|Caenorhabditis elegans Hypothetical
protein T09E8.1e protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 120 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 179
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 180 YQRIERLNEEYDGKIKNLMYDSERA 204
>Z81096-4|CAB54264.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 302 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 361
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 362 YQRIERLNEEYDGKIKNLMYDSERA 386
>Z81096-3|CAB54265.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 360 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 419
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 420 YQRIERLNEEYDGKIKNLMYDSERA 444
>Z78065-11|CAD54155.2| 922|Caenorhabditis elegans Hypothetical
protein T09E8.1c protein.
Length = 922
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 535 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 594
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 595 YQRIERLNEEYDGKIKNLMYDSERA 619
>Z78065-10|CAJ80826.1| 691|Caenorhabditis elegans Hypothetical
protein T09E8.1f protein.
Length = 691
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 304 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 363
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 364 YQRIERLNEEYDGKIKNLMYDSERA 388
>Z78065-8|CAD54156.1| 507|Caenorhabditis elegans Hypothetical
protein T09E8.1e protein.
Length = 507
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 120 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 179
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 180 YQRIERLNEEYDGKIKNLMYDSERA 204
>Z78065-7|CAB54297.2| 689|Caenorhabditis elegans Hypothetical
protein T09E8.1b protein.
Length = 689
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 302 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 361
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 362 YQRIERLNEEYDGKIKNLMYDSERA 386
>Z78065-6|CAB54298.2| 747|Caenorhabditis elegans Hypothetical
protein T09E8.1a protein.
Length = 747
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 360 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 419
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 420 YQRIERLNEEYDGKIKNLMYDSERA 444
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 187 KPTPSHKIPPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKL 366
K SH P Q R S SS ++ +E+ + + +LANK+++ + K
Sbjct: 160 KEQSSHSTPSQSRHSSSKSSHFNGSSNLSTSEQLRLQEMSDELANKDRKVTSLESKLLKA 219
Query: 367 TAARVKRNRARTAVFKSLKXKAERA 441
+ N K+L +ERA
Sbjct: 220 YQRIERLNEEYDGKIKNLMYDSERA 244
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 292 ESQWAQKLANKEKRAQMTDYDRFKLTAARV 381
E+QWA ++ RA +T+YDR K R+
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRI 836
>Z72516-2|CAA96689.2| 513|Caenorhabditis elegans Hypothetical
protein T25G3.3 protein.
Length = 513
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 231 QPLLVL*GSVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRI 410
+P+L D C + K + +++ Q+E TN L+ V T + C DCR
Sbjct: 85 KPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRR 144
Query: 411 QELEGEG*ACWXLRQ 455
E + AC +RQ
Sbjct: 145 AEAKDFWRACVQVRQ 159
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +1
Query: 214 PQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNR 393
P HS +S ++ DAK+ TE+Q A + + +++ KRN
Sbjct: 1620 PAYTEHSSFSM-DDTSQDAKIEPSLTENQQPTTTATTTTTVPQQQQQQQQQKSSKKKRND 1678
Query: 394 ARTAVFKSLKXKAERAGT 447
RTA ++ + +RA T
Sbjct: 1679 NRTAQNRTAENGVKRATT 1696
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +1
Query: 214 PQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNR 393
P HS +S ++ DAK+ TE+Q A + + +++ KRN
Sbjct: 1620 PAYTEHSSFSM-DDTSQDAKIEPSLTENQQPTTTATTTTTVPQQQQQQQQQKSSKKKRND 1678
Query: 394 ARTAVFKSLKXKAERAGT 447
RTA ++ + +RA T
Sbjct: 1679 NRTAQNRTAENGVKRATT 1696
>U00068-1|AAA50745.1| 85|Caenorhabditis elegans Hypothetical
protein W04D12.1 protein.
Length = 85
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 277 NEKWTESQWAQKLANKEKRAQMTDYDRFK 363
N KW A K+A KEK+ +M D ++ K
Sbjct: 43 NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,119
Number of Sequences: 27780
Number of extensions: 252752
Number of successful extensions: 680
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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