Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0105
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D57122 Cluster: PREDICTED: similar to trinucleot...    40   0.053
UniRef50_UPI0000DB762C Cluster: PREDICTED: similar to flavin ade...    38   0.28 
UniRef50_Q1JTB2 Cluster: Putative uncharacterized protein precur...    35   1.5  
UniRef50_Q8RZV3 Cluster: Zinc finger (C3HC4-type RING finger)-li...    34   3.5  
UniRef50_A7QZ00 Cluster: Chromosome undetermined scaffold_260, w...    34   3.5  
UniRef50_O15405 Cluster: TOX high mobility group box family memb...    34   3.5  
UniRef50_UPI00006CFA3E Cluster: hypothetical protein TTHERM_0044...    33   8.0  

>UniRef50_UPI0000D57122 Cluster: PREDICTED: similar to trinucleotide
           repeat containing 9; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to trinucleotide repeat containing 9
           - Tribolium castaneum
          Length = 554

 Score = 39.9 bits (89), Expect = 0.053
 Identities = 18/37 (48%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
 Frame = +2

Query: 407 RPENLEVPLSATR-DAKNSVYAMNDQTFHTPSFGDKN 514
           R EN+++ LS  + + +++ Y M DQTFHTPSFGD++
Sbjct: 44  RSENVDLSLSIPQSNFQSNGYDMGDQTFHTPSFGDED 80


>UniRef50_UPI0000DB762C Cluster: PREDICTED: similar to flavin
           adenine dinucleotide synthetase isoform 1; n=1; Apis
           mellifera|Rep: PREDICTED: similar to flavin adenine
           dinucleotide synthetase isoform 1 - Apis mellifera
          Length = 621

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
 Frame = +2

Query: 404 KRPENLEVPLSATRDAKNSV------YAMNDQTFHTPSFGDKN 514
           KR E+L+  L+  +   +S       YAM DQTFHTPSFGD++
Sbjct: 183 KRNESLDFSLNVPQHHHHSTQYHQSSYAMADQTFHTPSFGDED 225


>UniRef50_Q1JTB2 Cluster: Putative uncharacterized protein precursor;
            n=1; Toxoplasma gondii RH|Rep: Putative uncharacterized
            protein precursor - Toxoplasma gondii RH
          Length = 1453

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 389  LYNMYKRPENLEVPLSAT---RDAKNSVYAMNDQTFHTPSFGDKNLIFL 526
            L  + + PEN+E   +A      A NS+Y  ND  +    FG +NL+FL
Sbjct: 911  LKRLQENPENVETSRAACDFLSHASNSIYVTNDSRYLLNKFGPENLLFL 959


>UniRef50_Q8RZV3 Cluster: Zinc finger (C3HC4-type RING finger)-like;
           n=3; Oryza sativa|Rep: Zinc finger (C3HC4-type RING
           finger)-like - Oryza sativa subsp. japonica (Rice)
          Length = 313

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 351 HKLLPKIMIGHTSCTICTRDLKISKCPCPL 440
           HK    I  GHT C +C+R+L +S+  CPL
Sbjct: 272 HKGAAFIPCGHTFCRLCSRELWVSRGNCPL 301


>UniRef50_A7QZ00 Cluster: Chromosome undetermined scaffold_260,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_260, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 174

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 351 HKLLPKIMIGHTSCTICTRDLKISKCPCPL 440
           HK    I  GHT C +C+R+L +S+  CPL
Sbjct: 133 HKGAAFIPCGHTFCRLCSRELWVSRGNCPL 162


>UniRef50_O15405 Cluster: TOX high mobility group box family member
           3; n=34; Coelomata|Rep: TOX high mobility group box
           family member 3 - Homo sapiens (Human)
          Length = 576

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 446 DAKNSVYAMNDQTFHTPSFGDK 511
           +A N+ +A ++QTFHTPS GD+
Sbjct: 41  EANNAFFAASEQTFHTPSLGDE 62


>UniRef50_UPI00006CFA3E Cluster: hypothetical protein
           TTHERM_00442060; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00442060 - Tetrahymena
           thermophila SB210
          Length = 1093

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
 Frame = -3

Query: 425 LRDFQVSCTYCTACMTYHDFRKQFVDTPFQ--FVHRTRKIMTVHLQHQVLIFLKGYFDPA 252
           L +  VS         YH   +Q     FQ    + ++K  T  L  Q   F+ G F   
Sbjct: 548 LLEGSVSSNLLATLCQYHYILQQLTICNFQANLANSSKKQDTFQLSTQA--FIGGCFHEQ 605

Query: 251 VAAHKYLAIDVSQKVHFVVYYDNVIIRSSYQRLSMK 144
           +A  +     V  K+HF  Y+D++++   Y+   +K
Sbjct: 606 IALQEK-NFSVGSKIHFQQYFDHLMVLDFYENFEIK 640


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,798,954
Number of Sequences: 1657284
Number of extensions: 14020208
Number of successful extensions: 38155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38140
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)