Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0105
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1809 - 40029628-40030539 34 0.12
09_04_0651 - 19224403-19225032 31 0.81
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 29 2.5
01_02_0099 + 11092529-11093140,11094153-11094424,11095378-110954... 29 3.3
08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544 29 4.3
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 28 5.7
08_02_1334 - 26224546-26225337 28 7.6
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 28 7.6
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 7.6
>01_06_1809 - 40029628-40030539
Length = 303
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 351 HKLLPKIMIGHTSCTICTRDLKISKCPCPL 440
HK I GHT C +C+R+L +S+ CPL
Sbjct: 262 HKGAAFIPCGHTFCRLCSRELWVSRGNCPL 291
>09_04_0651 - 19224403-19225032
Length = 209
Score = 31.1 bits (67), Expect = 0.81
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 369 IMIGHTSCTICTRDLKISKCPCPL 440
I GHT C C R+L++ + CPL
Sbjct: 174 IPCGHTFCRACARELRVGRGRCPL 197
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 532 HGQHAPGSGVQNTHIQYTQLHHAAPQVGMMNPAQDGLAPPSG 657
H H PG+ NT Y+ + H ++G + APP G
Sbjct: 388 HHHHHPGADHHNTASSYSPVEHMVAELGRLLGDLRASAPPRG 429
>01_02_0099 +
11092529-11093140,11094153-11094424,11095378-11095438,
11095553-11095622,11095645-11095901,11096466-11096639
Length = 481
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 171 VQLSAIINEVQAKKRGAASVERIAESTWPARG 76
+Q SA+ N + A + G A VE + E+ W ARG
Sbjct: 232 IQASAV-NWLAAMEGGGAGVEGVKETAWSARG 262
>08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544
Length = 447
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Frame = -3
Query: 650 GGAKPSCAGFIMPTCGAAWCNCVY*ICVFWTPDPGACCPCIKG------ISNSCHQMKEC 489
G SCA + C + +C+ + PG C C G + C + EC
Sbjct: 313 GSGSGSCAAASRTPLPSYACRSAHSVCIDSSNGPGYICNCTAGYHGNPYVVGDCTDINEC 372
Query: 488 EMSD 477
E D
Sbjct: 373 EHKD 376
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 317 FEFCARIGMECPQTASENHDRSYKLY-NMYKRPENLEVPLSATRD 448
+ F A PQ + N R Y Y N Y P +L+VPL A D
Sbjct: 53 YVFAAATPYPPPQYTNPNLPRYYPQYGNYYPPPPSLQVPLPAPYD 97
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 369 IMIGHTSCTICTRDLKISKCPCPL 440
I GHT C C R+L + CPL
Sbjct: 228 IPCGHTFCRTCARELLAGRGRCPL 251
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 303 DRHNFSSSVHELEWSVHKLLPKIMIGHTSCTI 398
D +N SS+V L+P ++ HT CT+
Sbjct: 286 DTYNISSNVRGTRPDYRSLVPSSILNHTICTV 317
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 207 SLCCLLRQRDY*VQLSAIINEVQAKKRGAASV 112
S+CCL+ + Y V S +IN +A +G SV
Sbjct: 324 SICCLIHKYGYRVDKSLLINWFKATCKGLKSV 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,269,434
Number of Sequences: 37544
Number of extensions: 407686
Number of successful extensions: 1140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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