Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0105
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 31 0.55
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 31 0.55
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 31 0.55
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 31 0.55
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 31 0.96
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 31 0.96
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 30 1.7
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p... 30 1.7
Z75713-4|CAB00050.1| 603|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 28 6.8
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 28 6.8
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -3
Query: 596 WCNCVY*ICVFWTPDPGAC-----CPCIKGISNSCHQMKECEMS 480
WCN Y + W P P CP +KG+ + + K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -3
Query: 596 WCNCVY*ICVFWTPDPGAC-----CPCIKGISNSCHQMKECEMS 480
WCN Y + W P P CP +KG+ + + K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -3
Query: 596 WCNCVY*ICVFWTPDPGAC-----CPCIKGISNSCHQMKECEMS 480
WCN Y + W P P CP +KG+ + + K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = -3
Query: 596 WCNCVY*ICVFWTPDPGAC-----CPCIKGISNSCHQMKECEMS 480
WCN Y + W P P CP +KG+ + + K+C +S
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKNITKDCHVS 116
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -3
Query: 596 WCNCVY*ICVFWTPDPGAC-----CPCIKGISNSCHQMKECE 486
WCN Y + W P P CP +KG+ + + +K C+
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = -3
Query: 596 WCNCVY*ICVFWTPDPGAC-----CPCIKGISNSCHQMKECE 486
WCN Y + W P P CP +KG+ + + +K C+
Sbjct: 73 WCNATYDTVLCWPPTPANSSVTLQCPHMKGLDPNKYIVKRCD 114
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 641 KPSCAGFIMPTCGAAWCNCVY*ICVFWTPDPGACCP-CIKGISNSCHQMKECEMSDHSWR 465
+P+CA MP+C + C Y I T + C P C+ S++C Q C ++
Sbjct: 171 RPTCASSCMPSCSQS-CIQKYEI----TVEQETCVPACMPACSSACVQAVTCSTCTNNCP 225
Query: 464 THCS 453
+ CS
Sbjct: 226 SICS 229
>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
protein T08A9.1 protein.
Length = 1330
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 353 QTASENHDRSYKLYNMYKRPENLEVPLSATRDAKNSVYAMNDQTFHTPSFGDKN 514
+T+ R +K N KR LE L + + KN V+ + Q TP D+N
Sbjct: 270 ETSKNQEYRDFKGIN--KRFSQLEFSLKSCEERKNLVHKLVAQILETPKINDQN 321
>Z75713-4|CAB00050.1| 603|Caenorhabditis elegans Hypothetical
protein T01G9.3 protein.
Length = 603
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 533 CIKGISNSCHQMKECEMSDHSWRTHC 456
C + +SC + EC+ +D SW +C
Sbjct: 16 CSIALPSSCPNLCECDQNDSSWSVYC 41
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 647 GAKPSCAGFIMPTCGAAWCNCVY*ICVFWTPDPGACCPCIKGISNSCHQMKECEMS 480
GAK S F T G +C+ IC F P P C ++G +S E+S
Sbjct: 683 GAKVSVEAFRYQTTGQVQYSCLVRICPF-APCPKNTCDDVEGCDSSYMHRYRRELS 737
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 647 GAKPSCAGFIMPTCGAAWCNCVY*ICVFWTPDPGACCPCIKGISNSCHQMKECEMS 480
GAK S F T G +C+ IC F P P C ++G +S E+S
Sbjct: 524 GAKVSVEAFRYQTTGQVQYSCLVRICPF-APCPKNTCDDVEGCDSSYMHRYRRELS 578
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 647 GAKPSCAGFIMPTCGAAWCNCVY*ICVFWTPDPGACCPCIKGISNSCHQMKECEMS 480
GAK S F T G +C+ IC F P P C ++G +S E+S
Sbjct: 564 GAKVSVEAFRYQTTGQVQYSCLVRICPF-APCPKNTCDDVEGCDSSYMHRYRRELS 618
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,821
Number of Sequences: 27780
Number of extensions: 350762
Number of successful extensions: 905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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