Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0100
         (666 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F20DDD Cluster: PREDICTED: similar to ENSANGP000...    45   0.002
UniRef50_Q86983 Cluster: Orf1; n=1; Galleria mellonella MNPV|Rep...    39   0.12 
UniRef50_Q4AIB4 Cluster: Sensor protein; n=1; Chlorobium phaeoba...    36   1.2  
UniRef50_O45074 Cluster: Putative uncharacterized protein; n=2; ...    33   6.2  

>UniRef50_UPI0000F20DDD Cluster: PREDICTED: similar to
           ENSANGP00000010363; n=5; Danio rerio|Rep: PREDICTED:
           similar to ENSANGP00000010363 - Danio rerio
          Length = 394

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -3

Query: 487 RCQRKFHKCWAHHLASHRFEKGFFHKKYQNLR*YSDKFLSFYRMSVASFIKVLLDVRPYI 308
           R +R+    W H +   R + G FH+  Q LR    +F  ++R+    F  +L  V P I
Sbjct: 16  RRRRRRRSVWVHEILQARHQLGEFHRLVQELRLDDGRFQRYFRLDREQFDSLLSKVGPQI 75

Query: 307 TFMDTKFRKCI 275
              DT +R+ I
Sbjct: 76  ARQDTNYRQSI 86


>UniRef50_Q86983 Cluster: Orf1; n=1; Galleria mellonella MNPV|Rep:
           Orf1 - Galleria mellonella nuclear polyhedrosis virus
           (GmNPV)
          Length = 113

 Score = 38.7 bits (86), Expect = 0.12
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -3

Query: 502 KK*KKRCQRKFHKCWAHHLASHRFEKGFFHKKYQNLR*YSDKFLSFYRMSVASFIKVL 329
           +K  KR QRK  + W H   + R   G     ++ L+ Y  KF S YRMS ++F ++L
Sbjct: 54  RKQPKRRQRKQRQYWMHPFNTQRLLCGHHVTTFKQLKNYDLKFKSCYRMSYSTFCELL 111


>UniRef50_Q4AIB4 Cluster: Sensor protein; n=1; Chlorobium
            phaeobacteroides BS1|Rep: Sensor protein - Chlorobium
            phaeobacteroides BS1
          Length = 1633

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 382  LNIISNFDISYERN-LSQIYGWQDDEPNICEIFVDIFFSIS*YRSAIHTALL 534
            LN IS+ D+ Y  N   +IYGW  D      IF +  F  S YR  +H  ++
Sbjct: 894  LNSISDGDVKYMNNRFEEIYGWSRDILTNTSIFFEKVFPDSEYREKMHAQIV 945


>UniRef50_O45074 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 554

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 358 MSVASFIKVLLDVRPYITFMDTKFRKCISHFKEPPRL 248
           + + S ++++ D RPY T  D++FR+  S  + PPR+
Sbjct: 259 VGLLSPLRIVNDFRPYFTIHDSEFREYSSKSRSPPRV 295


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,544,207
Number of Sequences: 1657284
Number of extensions: 10731728
Number of successful extensions: 23125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23124
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)