Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0100
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    29   0.60 
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   7.4  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    25   7.4  

>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = -3

Query: 337 KVLLDVRPYITFMDTKFRKCISHFKEPPRLHIVRVRPTSYMDYKFYCGFFSAIIL*HYA- 161
           K LL   P    ++ +   CI   K P    + RV P       F  G  S  +    A 
Sbjct: 43  KALLSGTPVERVVNDRIN-CIDFVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAK 101

Query: 160 -VLNTVAGKNRKCGCLYSFS 104
            V N VAG +  CGC   FS
Sbjct: 102 LVANDVAGIDLNCGCPKHFS 121


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 311 HYLHGYKISQMYFSFQRTAAAAHSAC 234
           HY+H +  +Q   +F+RT ++  S+C
Sbjct: 326 HYIHIFVNTQPISAFERTLSSKRSSC 351


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 433 FEKGFFHKKYQNLR*YSDKFLSFYRMSVASFIKVLLDVRPYITFMDTKF 287
           F+K F+ K+++N+R  SD  ++ YR      +  L   +P  TF +  F
Sbjct: 82  FQKDFY-KEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGF 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,940
Number of Sequences: 5004
Number of extensions: 48687
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)