Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0100
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                28   7.9  

>SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -3

Query: 490 KRCQRKFHKCWAHHLASHRFEKGFFHKKYQNLR*YSDKFLSFYRMSVASFIKVLLDVRPY 311
           +R QR F   W       R  + +F   Y+      + F    RM   SF  +L  + PY
Sbjct: 49  RRRQRLFRPYWV----LPRPLQSWFEIHYRQRIIPENFFYRQMRMKRVSFDLLLATITPY 104

Query: 310 ITFMDTKFRKCI 275
           I   +T+FR CI
Sbjct: 105 IRRQNTRFRNCI 116


>SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -3

Query: 490 KRCQRKFHKCWAHHLASHRFEKGFFHKKYQNLR*YSDKFLSFYRMSVASFIKVLLDVRPY 311
           +R QR F   W       R  + +F   Y+      + F    RM   SF  +L  + PY
Sbjct: 49  RRRQRLFRPYWV----LPRPLQSWFEIHYRQRIIPENFFYRQMRMKRVSFDLLLATITPY 104

Query: 310 ITFMDTKFRKCI 275
           I   +T+FR CI
Sbjct: 105 IRRQNTRFRNCI 116


>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 100 NRKTNTSSRTCGSFPRLYLKPR-NVTKLSRKKNRNKIC-NPYN*LDVHXXXXXXXXXXNE 273
           NRK +T+SR    FP+ Y +P  N+ KL     R  IC  PYN               N 
Sbjct: 543 NRKFDTNSRVLEGFPKTYREPSVNLRKLIEYFPR--ICIFPYNFTKSVKLYSLEILNWNY 600

Query: 274 KYICEI 291
           +Y C++
Sbjct: 601 EYFCQL 606


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = -3

Query: 340 IKVLLDVRPYITFMDTK-----FRKCISHFKEPPRLHIVRVRPTSYMDYKFYCGFFSAI 179
           + VL  VR Y+T  D K     F K I         HI  V    Y+ YK+    F+ +
Sbjct: 508 LPVLETVRTYLTITDPKLTSRFFTKAIEKVNSKETSHIASVCSYRYLSYKYKYNTFTRV 566


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,058
Number of Sequences: 59808
Number of extensions: 339226
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)