Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0100
(666 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045641-5|AAC02577.2| 554|Caenorhabditis elegans Hypothetical ... 33 0.18
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 30 1.7
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 30 1.7
U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical pr... 28 5.2
U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical pr... 28 5.2
U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z49936-4|CAE47466.1| 343|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical pr... 27 9.1
AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and inte... 27 9.1
AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and inte... 27 9.1
AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and inte... 27 9.1
>AF045641-5|AAC02577.2| 554|Caenorhabditis elegans Hypothetical
protein F53H1.3 protein.
Length = 554
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 358 MSVASFIKVLLDVRPYITFMDTKFRKCISHFKEPPRL 248
+ + S ++++ D RPY T D++FR+ S + PPR+
Sbjct: 259 VGLLSPLRIVNDFRPYFTIHDSEFREYSSKSRSPPRV 295
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 379 YLNIISNFDISYERNLSQIYGWQDDEPN---ICEIFVDIFFSIS*YRSAIHTALLKS 540
Y N+I+ ++ + L+ WQ P+ +CE ++++ I + SA +KS
Sbjct: 429 YENLIATYETQFHVALTDALTWQSGSPSDEELCEQYIELPIGIQKFDSATQKTAIKS 485
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 379 YLNIISNFDISYERNLSQIYGWQDDEPN---ICEIFVDIFFSIS*YRSAIHTALLKS 540
Y N+I+ ++ + L+ WQ P+ +CE ++++ I + SA +KS
Sbjct: 586 YENLIATYETQFHVALTDALTWQSGSPSDEELCEQYIELPIGIQKFDSATQKTAIKS 642
>U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical
protein C56G3.1a protein.
Length = 490
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 270 ISKNRRGCT*CVYVQLVIWITNFI 199
I+ NR+ C V V L IWI +FI
Sbjct: 157 IASNRKQCFHAVLVSLAIWIVSFI 180
>U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical
protein C56G3.1b protein.
Length = 510
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 270 ISKNRRGCT*CVYVQLVIWITNFI 199
I+ NR+ C V V L IWI +FI
Sbjct: 177 IASNRKQCFHAVLVSLAIWIVSFI 200
>U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical
protein C30B5.5 protein.
Length = 790
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -1
Query: 237 VYVQLV-IWITNFIAVFFP 184
+Y Q+ +W+TNF+ VFFP
Sbjct: 175 IYQQVYSLWVTNFVMVFFP 193
>Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical
protein F13B10.1e protein.
Length = 801
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 580 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 611
>Z49936-4|CAE47466.1| 343|Caenorhabditis elegans Hypothetical
protein F13B10.1d protein.
Length = 343
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 125 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 156
>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
protein F13B10.1c protein.
Length = 1000
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 763 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 794
>Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical
protein F13B10.1b protein.
Length = 586
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 368 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 399
>Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical
protein F13B10.1a protein.
Length = 930
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 709 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 740
>AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform f protein.
Length = 589
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 368 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 399
>AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform c protein.
Length = 984
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 763 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 794
>AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform a protein.
Length = 931
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 382 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 296
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 710 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 741
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,281
Number of Sequences: 27780
Number of extensions: 272791
Number of successful extensions: 604
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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